SimpleSearch - Line and FST details


Line specific information

 
Line ID 556F03
Vector Used pAC161
Line Availability available as T3 set from NASC (N453343)
Segregation Analysis 50:43:30
Confirmed for Hit At5g60730 At2g03090
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g60730

 
Sequence (A. th genome BLAST matches underlined) 
>22-K025924-022-556-F03-8409
AAACGACAATCTGATCCCCGGGTATGGGATCCTCCCTATACTGAGATTTTATTTATTTTT
TACTTTTTGATCCTTCTTTACTTTAAAAAAAAAACCTCTCCCAAAAAAAATTTATTTTTA
CGTTTTCAGTGGTAAATTTATTATTTTGCCGCAAAACTTTTGGCCCCAACCCCTTGTATG
AAATCCCCCCTAAATTGAGAATCTGTTTAGTATATACTATATTCATAACCCTTGCTTGTG
ACCTAATGTGATATGGTTGTTGATGTTTCCCTCACTAAACCCCCCGCTTTAAATTATAAN
TAATAACCCACAACTAACCATACCAAAATAGAACAAATCTCCCAATATTACTAACAAAAA
A
GenBank Accession CR397964 [GenBank]
Graphic View Graphic view of gene At5g60730
Predicted Position of Insertion Chr5:24424918 - go to primer design
BLAST e Value 3e-19
Hit Clone Code (BAC ID) MUP24
Hit Gene Code At5g60730 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Anion-transporting ATPase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At2g03090

 
Sequence (A. th genome BLAST matches underlined) 
>22-K025925-022-556-F03-8409
NNNTTTTGGCGTTATCCGGAATGAACCATTTACATTGAATATATCCTGCAACATATGGAA
ATCCTCCCTATATTGAGGTATAATACAATCTGAGCCCCGTATATGCTATCCCCGCTTTCC
CGAGCTCTCATTTATTTTTGACCTGCTGATCCTCCTTTACATTGTTCATGTAATATCTCC
TCTTCCTTTCTTAGTCTTTCTTTTACTGTGTTTTTTCTTCTATCTTGCGGGGAACCAATA
GGGGTATAATTTTTGTTTGAAATCCCCCCTATTGCGGGGGTAAGATGGGTCTTTTGAGAA
TTGCTCTGTTTTGTTTTGCCGCAATGGTGTGCTCTGTTCATGGCTATGACACTGGATGCG
TCAATGCTCATGCTACCTTCTATGGTGGAAATGATGCTTCATGAACTATGAATATGTGCT
TCTCACTTTGTTCTCAAGGGTGGGGGGGACAAAACNAATTCTCTTTATATTCCC
GenBank Accession CR397965 [GenBank]
Graphic View Graphic view of gene At2g03090
Predicted Position of Insertion Chr2:918657 - go to primer design
BLAST e Value 4e-86
Hit Clone Code (BAC ID) T17M13
Hit Gene Code At2g03090 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation expansin A15
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37