SimpleSearch - Line and FST details


Line specific information

 
Line ID 605B06
Vector Used pAC161
Line Availability available as T3 set from NASC (N458002)
Segregation Analysis 50:27:22
Confirmed for Hit At1g79000
Parent of DUPLO pair none
Parent of pair(s) 3467, 3480

Gene hit At5g61230

 
Sequence (A. th genome BLAST matches underlined) 
>42-K021275-022-605-B06-8409
AACTTCAATTCAATTCTCACTGATCTCGACAAGAAAACCCTAATGCGAAAAAACTCCGAT
CTCTCTGGCGAGAAGTAAATTTTTATCTCTGAGCTTGGTTTCACCATTTCTCTATCTCTA
TCTCCTCGCTGGGTTACGGTACGAGCCTCTCAAACTTTTCGATTCCTTGTGTTCATAAGT
ATGTGTGAAAATCCTTGCGTGTCGAGATTGATTTTTCTCTTTTTCGTTTCGGATTCATCG
TTGGATTCTTATTTCGTCAATGTTTTTCTGTGATTTGTTCTGATTCATGTGTAATTTGTA
GCTGACTTGATTGGTGATCGATGATTAAAATTTGTACTCCTTAGTTCCCCCTTGATTCGA
TTGATTTTGTCTCTGTGAGGGTATTTTTTCTGATTCTATTG
GenBank Accession BX654267 [GenBank]
Graphic View Graphic view of gene At5g61230
Predicted Position of Insertion Chr5:24627132 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) MAF19
Hit Gene Code At5g61230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ankyrin repeat family protein
Insertion Classification Promoter
Confirmation Status unknown

Gene hit At1g79000

 
Sequence (A. th genome BLAST matches underlined) 
>42-K021294-022-605-B06-8409
TGGGATCCTCCCTATAGTGAGAGACTGATCAATCACATCCCTAGGGACCCTGATCCCCCA
CAAGAAAATGCACTTCACTGGATACAACACATGCCTAGCCTTAAAATTAACAGGATGCCT
TTCCCTGTCTTCACGTCTCTGCTCAGCCTCGTAACACCTAAAAAGAAGAATGACATTTTA
GATTCAGAGGAACTTAATCAGTAACAAGGACACATAGCCCATCCAATAAATGTATCTCTC
GGGACTTCTACATAATCTTATGTGCAATACAACAAAGAAGGGATTATAAAATCAAAGAGC
AAAAAGACCTCGAAAGAATTCTTACTTGTCACAAATCTGGAAGTGTTTGCACTGGCTGCA
GACCCAACGATTACCAGATACCATCAGTATGCAGCAATGAGTGCAAGAAGGCTGCAAGTG
GACCATGATAAAGTCCTCCTTCATCGGGTGAATGGTCTCACCGAGCTGGGAATCGGTAAA
ACAGGTGAATATGATTAACAAGAAAAACAAAACA
GenBank Accession BX654268 [GenBank]
Graphic View Graphic view of gene At1g79000
Predicted Position of Insertion Chr1:29717901 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) YUP8H12R
Hit Gene Code At1g79000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation histone acetyltransferase of the CBP family 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37