SimpleSearch - Line and FST details
Line specific information
| Line ID | 611A10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N458570) |
| Segregation Analysis | 50:50:38 |
| Confirmed for Hit | At4g18610 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 95674 |
Gene hit At4g18610
| Sequence (A. th genome BLAST matches underlined) | >73-K021892-022-611-A10-8409 AAAGATGATCACCTCGACAGTGTCACCATATGCTGTTGCAAGTGATTACTGTATTGTAAG TCCCTTGTATAAAGGCAACTATCATGGAAAAAATCCCCACTATGTCTTTGATGACACCTG CATACAATGCACGGCGACCTATGGGATCCTCCCTATAATTAGACAAAACTCGGTTCCAAT TTTGAAGATTTGAACAAAGATTCCCCCCTTAATTTTTTTCATGGTACAGTTTTCACCTTT ATGCAACACCTTCCTCCTCATGGGATCCTCCCCACAGCGCGTATGAATCGCAGAAACGCC GCGACTGGAACACGTTCGTCCAATACCTAAAATCACAAAATCCACCGTTGATGATGTCTC AATTCGACTACACGCACGTGCTAAGTTTCCTAAGGTACTTAGATCAGTTTGGTAAGACCA AAGTACATCATCAAGCTTG |
| GenBank Accession | BX656059 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:10250570 - go to primer design |
| BLAST e Value | 2e-84 |
| Hit Clone Code (BAC ID) | F28A21 |
| Hit Gene Code | At4g18610 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | LIGHT-DEPENDENT SHORT HYPOCOTYLS-like protein (DUF640) |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g44930
| Sequence (A. th genome BLAST matches underlined) | >73-K021888-022-611-A10-8409 ATCGGACATGAGCCTTTACATTGGAGGATATGTACATTCATGCCGTGATTATTACCGCAT TGGCTTCCGCTGCTTATTTTGTGTTTTTCAACATGAAATATATTTTAGGACCATTAATGA TTGGCATCATCATACCAGAGGGTCCACCATTAGGATCGGCTCTATGGGATCCTCCCTATA GTGAGATGTAATCCTCCTTCTTTTCTAAGGTATATGGACATCTCTCATGACTCCGTTTGA TTTGAATACTTAGTTGGAACGTCTTCCTTTTCAAACATGAACTATTTGGAGTAGAGTTCA ATCTTTTTTTCCTATGATGGTAAAGGTTTTAACTTGCACGGATAATTATTAAGACCGGGG ATGGCTTTTATATGAGACTACTTCATTATCCACTCTCTGAAATTTTATCCGACTTACATA TAGTTGGTGAAATACTATGTTTGTACTTTGTTAATGCTATGTTCACACGTTACTTTCTAT GATTTTATTTGTCGTCATCCAACAAAATTAATATATGCAGGTTCACAAGACAA |
| GenBank Accession | BX656058 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:16403674 - go to primer design |
| BLAST e Value | 2e-75 |
| Hit Clone Code (BAC ID) | F28D10 |
| Hit Gene Code | At3g44930 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cation/H exchanger 10 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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