SimpleSearch - Line and FST details
Line specific information
| Line ID | 621H03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N459607) |
| Segregation Analysis | 50:34:33 |
| Confirmed for Hit | At1g63640 |
| Parent of DUPLO pair | 8011 |
| Parent of pair(s) | none |
Gene hit At1g63640
| Sequence (A. th genome BLAST matches underlined) | >24-K021953-022-621-H03-8409 GNAGCCATTTACAATTGAATATATCCAGACTAAAAGATCGCATGAATATCGCTTGATCTT TTCTACGGCGTCGGACCCTCATTGGAACGAAAACTCAGATTAAGGGATTTTGGTCATGAG ATTATCCACGGGAACTTCACGTATGTTATCCACCCCATAATGAGCCTTATGACCTGGTTA TCTCAAGGTAATTCAGAATGTCTTTCCATATTTAATACACCCTATTTTTCGACAGAAATG AAAAATAATATCCATGAAAACATAACAGACCTGTTCTATATCTGAAACTTCGAACCTATG GGATCCTCCCTATAGTGAGACNAACAGAGCCGCACTCAATGAGAATCAATAAAAGTCAAA GGACAAAAAAAGCAGAAAAATCCTACTAATAGAGAAAGAAGAACCACCGTAGATATAAGA GAGAAACAAAATAAGAAAATAAACAACCAAAGCAAAAAAAGAAAGGTTTTTTGATATTGA GACAATTGAAAGTAATTAAAAACCCAGGAAAGATTTATAACCAGAAAATTCACAAGAAAA CAAA |
| GenBank Accession | BX657001 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:23594108 - go to primer design |
| BLAST e Value | 3e-31 |
| Hit Clone Code (BAC ID) | F2K11 |
| Hit Gene Code | At1g63640 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | P-loop nucleoside triphosphate hydrolases superfamily protein with CH (Calponin Homology) domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX892605 [GenBank] BX892605 [GenBank] BX657003 [GenBank] BX657001 [GenBank] |
Gene hit At5g49890
| Sequence (A. th genome BLAST matches underlined) | >24-K021950-022-621-H03-8409 CGCGAAGAAGCCATTTACAATTGAATATATCCTGATGACAGGTATCGCATGAAATTCCCT GAATATATCACCCCGTCTCGTATCCACCCTGTGGAATTAAAAATGCCGTCAAGGGATTAA GCCGATGAGACTCTATATGGGATCGTCACCCATCTTTACCGCCACTTCAGTGCCTGTATC ACTTGGATACTTTGACGCAAGGGAAACTGCCGTTCCGTAATTAAGAAAGCCCATTTTTCG ACAGAAATGAAAAATACTATCCGTGAACTCCTTCACGACTTGTTTTATATCTGAATCTTC CAGCATATGAAGGGTAATTTAAATCGGAAGAGAATAAAGACTCATGTTACAAAACACAAT AATGTACACAGGCGCAAAACATAATATAAATAATAATAGACTAGAACAACAAACAGGATG CAATAAAATATAGACACCCATATAAGCAAAACGTCACTCGCAAAGAAGGCTACTCAAATA ATGAATATCAAAAAATTAAAAGCCCTTAATACATTAAATACGACAAGATAAAATTACACA TAACGAAGCAAATAGCACGAATATATAATCATCACTGT |
| GenBank Accession | FR813423 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:20288777 - go to primer design |
| BLAST e Value | 2e-04 |
| Hit Clone Code (BAC ID) | K9P8 |
| Hit Gene Code | At5g49890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | chloride channel C |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
