SimpleSearch - Line and FST details


Line specific information

 
Line ID 629A01
Vector Used pAC161
Line Availability available as T3 set from NASC (N460289)
Segregation Analysis 50:15:14
Confirmed for Hit At1g14240
Parent of DUPLO pair none
Parent of pair(s) 64138, 95039, 95040
Note

Gene hit At1g14240

 
Sequence (A. th genome BLAST matches underlined) 
>01-K113865-0022-629-A01-8409
GATTGTGTATGAAATATTTATTTAGGAAATCCCCTTATAAGTATTTTGAGGTACATGATC
AATATGAAGGATTGCCATTTGACGTTTGATCAAATAGTTCTTTCTATTAATTCAACGACA
GAGGACATTTGAATTTTTGAAATATGTAAAAATTGGTAATTACTCTTTCTTTTGTCTGCT
AATTGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACA
ATTGAATATAGATTGTGTATGAAATATTTCCGTAGGCAATCGTACGCGAGTACTCAGGAG
GCACATGCTCACTTGACACAAATGTCACCTAAACATATGCACAAATAGTCATCACTAACA
ATTCGACCATATACCACAGTTGAAGTCTAAAAATATGTTACAAAGTCAACATCTAAAAAG
CCCGGCCG
GenBank Accession HE664817 [GenBank]
Graphic View Graphic view of gene At1g14240
Predicted Position of Insertion Chr1:4866741 - go to primer design
BLAST e Value 2e-89
Hit Clone Code (BAC ID) F7A19
Hit Gene Code At1g14240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GDA1/CD39 nucleoside phosphatase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g26400

 
Sequence (A. th genome BLAST matches underlined) 
>01-K022080-022-629-A01-8409
NNNNGGTAGTATTCGGACATGAGCCTTTACATTGAATATATCCTGGGGCATTCTGCATTA
ACTGGATTCAGACATTTGTGAACACATGTGACACCAATACCTAGTGGGATCCTCCCTATA
ATGAGAGTATGTAGGCGGTGCTACAGAGTTCTTGAAGTGGTGGCCTAACTACGGCTACAC
TATGGGATCCTCCCTATAGTGAG
GenBank Accession BX657994 [GenBank]
Graphic View Graphic view of gene At4g26400
Predicted Position of Insertion Chr4:13345972 - go to primer design
BLAST e Value 2e-10
Hit Clone Code (BAC ID) M3E9
Hit Gene Code At4g26400 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation RING/U-box superfamily protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37