SimpleSearch - Line and FST details
Line specific information
| Line ID | 630F10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N460454) |
| Segregation Analysis | 50:12:7 |
| Confirmed for Hit | At4g10520 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 84034, 84038, 84044, 84047, 84054, 84057, 84059, 84060, 84061, 84062, 84063, 84064, 84065, 84066, 84067, 84068, 84069, 84070, 84071, 84073, 84080, 84090, 84093, 84094, 84095, 84096, 84097, 84098, 84099, 84100, 84101 |
Gene hit F1N19
| Sequence (A. th genome BLAST matches underlined) | >78-K114693-0022-630-F10-8409 ATTTTCGTGTACCAAATATAAATAAAAAAAATTATTCAGCACAGGTAACTTCTACGAGAT TTTTCTGATTGTATTTTGTTGACAATAGCTTCGTCCATGAAAATAAAAATATTCCAAGCC CTAACACTCACTCACCCAACTAATAAATTAATTCGTAAAATGCCGTACGGAGAAAGTATT GTGAAATTAGTTGGAGAAAATAAAATCATAGACTAATCGTTGAGGGAAATAAAATGTGCA AAAAATGAAGAATAAAAACAAAAAGGAATTGGTGAGAGGAGTCATAGAAGAAGAGTCAGT CGTGTGTTCAATCCTCGTGGCCGTGGGTGTTGAGGTTCCTCACTCTCCACATGATATCAC GTTTCTCGTGGTGCGGAGAGACAGACGTGAAAAGAACGTTATTTGAGCTTTTGCTTTTCT TAAAAGGAGCTAAATAATTGTTGGGCTTTCTAAATTCCAAAAAGTCAGCCACTCGTGAAA ACTCTTAAATGGGCTCTCACTAACCTGCCCCGGCCGCTAAAANTNTNNTNGNAATCTCAT AAAANAACCNANCCTGCGCGGCCGCTACAAAANNGNCNNGGGTGTTNAAGCTCCCCCCCC CCCCAATGAAAACCCGCTCCCGTGGGGGGAAAAAACAAAATGAAAAAAAGTTTTTTTTAA CTTTTTTCTTCTAAAAAGAGGCAAAAATTGGTGGGCTTTTAAATCCAAAAA |
| GenBank Accession | HE664946 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:24002771 - go to primer design |
| BLAST e Value | 3e-129 |
| Hit Clone Code (BAC ID) | F1N19 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At4g10520
| Sequence (A. th genome BLAST matches underlined) | >78-K114692-0022-630-F10-8409 TCATCTAGCCCCCATTTGGACGTGAATGTAGACACGTCGAAATAAAGATTTCCGAATTAG AATAATTTGTTTATTGCTTTCGCCTATAAATACGACGGATCGTAATTTGTCGTTTTATCA AAATGTACTTTCATTTTATAATAACGCTGCGGACATCTACATTTTTGAATTGAAAAAAAA TTGGTAATTACTCTTTCTTTTTCTCCATATTGACCAACAGAGGCTGTTACATGTGCCTAT TACTATCCAATTAAAGCTAGTTAAGGTATAGGGATTTGTAATAGAAAAAATGGATGCCCC ATTTGTATTCTTAATTAGGGTTGTATACAGGCGGAATGTCCCCATTTTATTATCAGTGGA ATCCCAAAAATAGTTATTTGACTTCAACTACGACAGATTACGGATATCTCCTACCAGCCC TGACGCTATTGTTGTGTTGATGAAATATCTAAAGTATCACGTTGATGTATAATACTATCT AAGTTGTGTTCTATTGATTTGTTGAAGATTATGTAAAGCATTATATCATACTGATGAATA ATACTATTATCTAAATAGAATCTCATAACACACTCTA |
| GenBank Accession | HE664945 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:6502501 - go to primer design |
| BLAST e Value | 1e-78 |
| Hit Clone Code (BAC ID) | F7L13 |
| Hit Gene Code | At4g10520 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Subtilase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit MDB19
| Sequence (A. th genome BLAST matches underlined) | >78-K022799-022-630-F10-8409 TGAACCATTTACAATTGAATAATTCAATTGAATATTCATATTGATTCATCTTCATTTACA TTTGTAGGCTCTTGAGTCTCTATACAAATTAGAGAAAACTCAAACTTATATTAAAAATCC TCAAAAACAAGTTTAAACCATGCTGGCACTTCAAAATTTGTGGGATGACATTGCCTATGT CGATGTGGAGGCCAATCTGATACTTGCATGATTCTTCAACTTTCCCGCTTTGATCTACCT CTGCCCGATGTAACAATCCACGCGTGATTCCCCA |
| GenBank Accession | BX892754 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:8452049 - go to primer design |
| BLAST e Value | 1e-104 |
| Hit Clone Code (BAC ID) | MDB19 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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