SimpleSearch - Line and FST details


Line specific information

 
Line ID 632B04
Vector Used pAC161
Line Availability available as T3 set from NASC (N460592)
Segregation Analysis 50:33:27
Confirmed for Hit At3g62980
Parent of DUPLO pair none
Parent of pair(s) 3928, 3981, 7202, 85486
Note

Gene hit At5g23000

 
Sequence (A. th genome BLAST matches underlined) 
>26-K022082-022-632-B04-8409
AGCCATTTACATTGAATATATCCTGGTATTTATTAATTTTCACGTAGATTAGGTTTCCTC
CCTATAGGGAGGCACATCTCCTCGGACACTTACCCACGACTGAGAATGGCATAAGCTCTT
ATTTGGGCTTAGAAGCTCGAAAAGGTTACCTATGGGATCCTCCCTATAGTGAGAATGGGA
TCCTCCCTATAGTGAGANNNAAGAAACGTATCACACACAAACCCCAATTGATTACATTTC
CCACCACAGGAGATTCCCTGAAAGCGAAACAACCAGGAATACGTAAATACGGCACCGTTA
AATAAGGACCCATAAGATAGAATTAAAT
GenBank Accession BX658144 [GenBank]
Graphic View Graphic view of gene At5g23000
Predicted Position of Insertion Chr5:7696510 - go to primer design
BLAST e Value 2e-17
Hit Clone Code (BAC ID) MRN17
Hit Gene Code At5g23000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation myb domain protein 37
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 573H03

Gene hit At3g62980

 
Sequence (A. th genome BLAST matches underlined) 
>26-K022797-022-632-B04-8409
AAGCCATTTACATTGAATATATCCTGACAGGCTACCCGGGGTATCTTTTCATGTAGATTG
CCTTCGGTTTCTCCATAATGACAATTATGCTCATGTATTGCAAGCAATGTTTATGTTCTC
CAAGTTGCATAATGAGGGACACTCGATGCTAATTATGCGATTTCTAATGCCCCAATCTGA
GenBank Accession BX658145 [GenBank]
Graphic View Graphic view of gene At3g62980
Predicted Position of Insertion Chr3:23275115 - go to primer design
BLAST e Value 1e-27
Hit Clone Code (BAC ID) T20O10
Hit Gene Code At3g62980 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation F-box/RNI-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX658145 [GenBank]


Last Updated on 10.06.2021 13:37