SimpleSearch - Line and FST details


Line specific information

 
Line ID 643A02
Vector Used pAC161
Line Availability line died - no seeds available
Segregation Analysis unknown
Parent of DUPLO pair none
Parent of pair(s) 12822
Note

Gene hit At2g05420

 
Sequence (A. th genome BLAST matches underlined) 
>09-K022303-022-643-A02-8409
ACATTTTAACACACCCCATAAAATAGAGCTGGCATACAGAACGATAACCTGTTAGTTTGG
AGAGTTTTTCTGCTCCCTGAATTACGAAAGTAAGAGAACATTTAGTGTGTCTTGTCCATC
CAATACGGAGGGGGGGGGGGGTANCAACGTTTAAATACCAAGCCTAATTATTAACCCTAT
AAGCCAACTAAGTCGCCTTTTCTTTTCCCTTGGGATACGCCTTCACACCCCCGCATGCAA
AGACCCCCGTACATACGCAACCCAACCCCTATTCTATGCAAACCTCCCC
GenBank Accession BX659116 [GenBank]
Graphic View Graphic view of gene At2g05420
Predicted Position of Insertion Chr2:1984352 - go to primer design
BLAST e Value 1e-45
Hit Clone Code (BAC ID) F16J10
Hit Gene Code At2g05420 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation TRAF-like family protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 650H12

Gene hit At3g55230

 
Sequence (A. th genome BLAST matches underlined) 
>09-K022257-022-643-A02-8409
NNNNCCGTAGTATCCGGAATGNAGCCATTTACAATTGAATATATCCTGAAATCTACATGA
TATTCCAAGCCATATTAACCAATTGAAAAACCCTTATAGGCTTATAGCTAAACCTTAAAC
CCTAATCCTTTGTTTTGCTAACACTATGGGATCCTCCCTATAGTGAGACGAATCAAACCC
CCCCTGCGTTATCTATTGGGAAAATGTCGTTGCTGGATTTAAAAAACGGCATTCCATTCA
CCTCTGTTTGTGCTACTATCCCTGTACCCACACATGCTGATGGGTGTGACCCGCCTATGC
GATCCTCCCTATAGTGAGACGCCAGCCAACCAAAACCGAGGTAATAATAATCGGCTAAAC
CCATATTCTATGGGATCCACCCTAAAGTGAGTAGACATACTCCAGAAACGATCAGGAATC
AGACAACTCA
GenBank Accession BX659115 [GenBank]
Graphic View Graphic view of gene At3g55230
Predicted Position of Insertion Chr3:20472294 - go to primer design
BLAST e Value 4e-43
Hit Clone Code (BAC ID) T26I12
Hit Gene Code At3g55230 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Disease resistance-responsive (dirigent-like protein) family protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37