SimpleSearch - Line and FST details


Line specific information

 
Line ID 644H11
Vector Used pAC161
Line Availability available as T3 set from NASC (N461823)
Segregation Analysis 50:11:9
Confirmed for Hit At2g30240
Parent of DUPLO pair 2747
Parent of pair(s) none

Gene hit F9I5

 
Sequence (A. th genome BLAST matches underlined) 
>88-K023312-022-644-H11-8409
TATTGATTGATACTTACAATAGCTTTTTATCCGGGTTTCCTCCCATGCTCCATATTATTT
TTCCCTATCGTCAATCCTATTAAAGCGAGTAGAAAGAGGGACTCATACTTTGATGACCTC
CCTTTACTCAGTAATTTATCCTTACCCATTGTCGATTAACTGTATGTGTTTGNTATATTA
TAACGTGGGCGGTGGGATCCTCCCTATAGTGA
GenBank Accession BX893331 [GenBank]
Graphic View Graphic view of sequence BX893331 of line 644H11
Predicted Position of Insertion Chr1:19433249 - go to primer design
BLAST e Value 4e-18
Hit Clone Code (BAC ID) F9I5
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At2g30240

 
Sequence (A. th genome BLAST matches underlined) 
>88-K022719-022-644-H11-8409
CATTGAATATTATTGAAGCCTTCATCAGATTCTTCTCCGCTTAACATCGAAAGCTCCATA
GTCTTTTCCTTATCGGTAAGACGAAGAAAGCGAGTAGAATGAGGGAGAGAGACTATGGGA
TCCTCCCTATACTGAGTCGTATTACTCAGATCCTTGCTATAGAGTGGCGTGTTACTCATA
TATTATAACATAACTGATGGGATCCTACCTATACTGAGTCGTATTACTCAGCACGGCCTT
CCCATCTCACTGCTGGCAGAGAGAGTTCCTGAATTTTAAAGATGTTGATTACGAAATTTT
CGCATTTGAACCTGATGTATTATTTTCAATCGGTTAAGAATTTTACTATTACATCTGACT
CGATTACATAACTGTTACAAAGATCCATGTTTTTAAGTGGACAGATTAGTAGTGATAACT
ATATATTTTGTTGTATTTATATCTGATAACTACATCTAA
GenBank Accession BX659277 [GenBank]
Graphic View Graphic view of gene At2g30240
Predicted Position of Insertion Chr2:12902751 - go to primer design
BLAST e Value 2e-26
Hit Clone Code (BAC ID) T27E13
Hit Gene Code At2g30240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cation/hydrogen exchanger family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX659278 [GenBank] BX659278 [GenBank]


Last Updated on 10.06.2021 13:37