SimpleSearch - Line and FST details


Line specific information

 
Line ID 647E04
Vector Used pAC161
Line Availability available as T3 set from NASC (N462068)
Segregation Analysis 50:8:4
Confirmed for Hit At5g11060
Parent of DUPLO pair none
Parent of pair(s) 3226, 9647

Gene hit At1g67770

 
Sequence (A. th genome BLAST matches underlined) 
>29-K023320-022-647-E04-8409
ATATTCTCCCTATATCGAACTATTTCTCTCTCTCTCTACCTCTTTATTTGGTGCCAAGGG
GAGGTAGAGA
GenBank Accession BX893522 [GenBank]
Graphic View Graphic view of gene At1g67770
Predicted Position of Insertion Chr1:25407971 - go to primer design
BLAST e Value 1e-06
Hit Clone Code (BAC ID) F12A21
Hit Gene Code At1g67770 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation terminal EAR1-like 2
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At5g11060

 
Sequence (A. th genome BLAST matches underlined) 
>29-K022672-022-647-E04-8409
CATTTACATTGGTTATTAAGTACGTTTGATACATCTTCGGTGATCGTGTGGGATCCTCCC
TATAGCGAGATCGTACAGGATCCTCTCAATTGCGAGGAAAAAAAAATTACACATTCTTAG
CTTTGATGCCTCTATCGACCATCCAATCACAGATGCTTCCTTCTCCGCCACAGATAGACA
ATTGACTCTCATGATCCTCAACGTGCCTGTGAGTTTGAAGGATCGCAATCTACATGTACC
TTGAAACATCCGGTGACATCATCTACGACGTTCCCTCCGGAGAGGATTCTATGAACGTAG
ACAATAAGGAGGCGTACATGTGGCGAAATGCGATACACACGGCGCAGATACTGTCTCATA
CCACTATACGAGCAACTTTTGTCGGCACACGTGGCGTGCCTGATGATCGCAACGCCGGTG
GATCACCTTCCGAGGATAGACGCACAGCTTGCTCATTCTCAAAACGACGTGGCTAAGTAT
GGGATCCTCCCTATAGTGAGTAAGTAAGGGATCCTCC
GenBank Accession BX659672 [GenBank]
Graphic View Graphic view of gene At5g11060
Predicted Position of Insertion Chr5:3510474 - go to primer design
BLAST e Value 9e-72
Hit Clone Code (BAC ID) T5K6
Hit Gene Code At5g11060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation homeobox protein knotted-1-like 4
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX893520 [GenBank] BX659673 [GenBank] FR814011 [GenBank] FR814011 [GenBank]


Last Updated on 10.06.2021 13:37