SimpleSearch - Line and FST details


Line specific information

 
Line ID 673F07
Vector Used pAC161
Line Availability available as T3 set from NASC (N464579)
Segregation Analysis 50:50:49
Confirmed for Hit At5g40280
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g40280

 
Sequence (A. th genome BLAST matches underlined) 
>54-K023064-022-673-F07-8409
NGCTTAAATTCCCGGAATGNAAGCCATTTACAATTGAAATATATCGCTGCCTTGGATTCG
GAAACCCCTCACCAGTAAACCGCGGCTTAGATTCGATCTGAACTGCTGTAGAGGTGTCAG
ACGTTGACCGTGAGTTGGACTCAATCGGTCGAATCTAGTCACGGTAGGACACGGAGGAAT
CAACTGCGGCGGAGAGTGATGGAAGAGCTTTCAAGCCTAACCGCGAGTCAGCGCGAGCAA
TTTCTGGTGGAGAACGATGTGTTCGGGATCTATAATTACTTCGACGCCATCGACGCTTCT
ACTCAAAAATACTTGAAAGCTCACGGATTTGATTAATGTACGTTCTTTTTCT
GenBank Accession BX661359 [GenBank]
Graphic View Graphic view of gene At5g40280
Predicted Position of Insertion Chr5:16101373 - go to primer design
BLAST e Value 6e-73
Hit Clone Code (BAC ID) MSN9
Hit Gene Code At5g40280 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Prenyltransferase family protein
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g57180

 
Sequence (A. th genome BLAST matches underlined) 
>54-K022949-022-673-F07-8409
AGGGAGATGAGGATCTCATTATAGGGAGTGGGATCCTCCCTATAGTGAGTGATCCCTCAC
TTTCTCAATCAAATCTCCCCCTCATCAAAAAATCTAAATTATAAACCAAAAGGGACCATA
CCTTAAAAGAAACTAAAAAGGAGGGTGCCAAAATTTTACAAACAAAAATAAAACAAGGAA
TAAACAAAAGATAAAAAAAAAAAAAAAAAACAACCCCAGGCCCTTTTATCCTGGTAATCT
TTGTCACTTTGGAGGGTTCCAATGTGAACTTTCTCCAAAATCGAACCTGTATCACATACA
CCATACCCTCCCTCCCAAACAACCAAAAACTT
GenBank Accession BX661358 [GenBank]
Graphic View Graphic view of gene At5g57180
Predicted Position of Insertion Chr5:23171012 - go to primer design
BLAST e Value 4e-12
Hit Clone Code (BAC ID) MUL3
Hit Gene Code At5g57180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation chloroplast import apparatus 2
Insertion Classification TS2TE (3')
Confirmation Status unknown


Last Updated on 10.06.2021 13:37