SimpleSearch - Line and FST details


Line specific information

 
Line ID 800C02
Vector Used pAC161
Line Availability available as T3 set from NASC (N476730)
Segregation Analysis 50:43:40
Confirmed for Hit At5g22060 At2g39000
Parent of DUPLO pair 2256
Parent of pair(s) none

Gene hit At5g22060

 
Sequence (A. th genome BLAST matches underlined) 
>11-K025366-022-800-C02-8409
ATCGGAGAATTCAAATCAGACTACTATTTTTACGGATTGAATTTGCTTACAATCTAAACT
GAGAATCGTAAAGATAAACCTTTTCGGGATCACCACCCTTATCAGGATGGTTTTTGATTT
CGGCTTACTTATGTTCTTTATTGATATCTATCGCTGATGGAGCCACTTGGACTCCACCGA
ATACCTCTCCTGACTGCGTGTTTACCTTCCTGATGAAGCTATCGTATCCTCCCGATAGTG
AGTCTGTTCTTACAAAAACCCTAATAAAATTAATCAGAGAGAATAGTCTTCACGAGGAGA
AGGAGACCGACTTTGTTGTGAAAGTTATTTTTGTGGCGACGACAAGGTACCATCCGTCGT
ATTTATAGGCGAAACCACTATTTGAATTATTCTATTT
GenBank Accession CR359839 [GenBank]
Graphic View Graphic view of gene At5g22060
Predicted Position of Insertion Chr5:7305355 - go to primer design
BLAST e Value 3e-28
Hit Clone Code (BAC ID) T6G21
Hit Gene Code At5g22060 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation DNAJ homologue 2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR359839 [GenBank]

Gene hit At2g39000

 
Sequence (A. th genome BLAST matches underlined) 
>11-K025367-022-800-C02-8409
TCACATTTACATTTATAAGACAATAATCGAATCCTGATCCGAGCACCACACATTCCCAAC
CGAAACTGACAAGATCCTTCTTTCACCAAGATTAGCTAACGATTGCGAAACTTTATGTTA
TCCTATGGGATCCTCCCTATCGCGAGAGCTAGAGCACTGTCGAAATCAGGGCATCGATGG
TGAAGTTTCTCAGCTGCTCCCCCATTTGCACGTTGGTGTATGCACGTCGAATTATAGATT
TCCGAATTGCAATATTTTGTTTCTTGCTTTCGTGTATAAACACGAAGGATCGTAATTTGT
CATTTTATCCCTTTGTCCTTTCTGTCTACATTACCGCTGCGGGGCTCCATATTTTGTGAA
TTTTCAA
GenBank Accession CR359840 [GenBank]
Graphic View Graphic view of gene At2g39000
Predicted Position of Insertion Chr2:16286794 - go to primer design
BLAST e Value 8e-41
Hit Clone Code (BAC ID) T7F6
Hit Gene Code At2g39000 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Acyl-CoA N-acyltransferases (NAT) superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37