SimpleSearch - Line and FST details
Line specific information
| Line ID | 810E10 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N477722) |
| Segregation Analysis | N/A (line seemingly not resistant, T2 plants grown without drug) |
| Confirmed for Hit | At3g44670 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4399, 4451, 78542, 78548, 78549, 78819 |
Gene hit F20P5
| Sequence (A. th genome BLAST matches underlined) | >77-K025201-022-810-E10-8409 CCATTTACACGTAATTCAAAGACTTTTCTTAATCGTTATCTGAAGTGAAGTCATAATCAT TCTAATATTTATTTATGTCTCATGAGGAATAATTAAATCACTGTTAAATGAAGTTAGTAA AGTTTTATACACTTCTCACATCTTTTTTTAACTGATATATGAGTGACGTTACTAAAGTTT GACGCTTTTACTCCATTATTATGATAGAAACAGTGACGCCTGTTGTACGTCATCAATGAT TTCATGGCATACTCAACGCAGAGATGATTCATTTTACCCACCAACATGTAATCATTTTAC TAGACGGTAGAAACTTTTACAGCAATAAAAGATACATTTGTATTTGTAGTTCAAAATAAG ATTTCACAGATTCACGACGCATGCAGTTTGTACTGAATAATACACTTGACCTAATTATGA TCAAGTATGGGTAAATATAACAGTGAAATGCTATGGGACCCTCA |
| GenBank Accession | CR360333 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:26449594 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F20P5 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR360333 [GenBank] |
Gene hit At3g44670
| Sequence (A. th genome BLAST matches underlined) | >77-K025526-022-810-E10-8409 NNNTTCGTGTGATTCGGACATGAGCCTTTACATTGAATATATCCTGATCAAGAGTTGACG TTTCGTAAAGCCATGATAAACGAATTGCTTACGAGAAGTTTCTCTTCCGAATTGTCTGAG CAAAGTATGCATATTTATTGTGTCTCCATATAAGGAATTCTCATCAATGGATATGAGAGA TTTCTGAGCTAATACGTGAAGACCTTGTTTCACATCCAAGAACTTGTTTGCAAGAACCTC TTCCACTTTGGTTGTTGATTCATAGTTAGAAAGGCAGGCTATATAAAGAAGGAGATATTT ATCTTCGTCACATAAGCCATCGTAACTGAACTGTATAATGCTCCCGATATTTCCGTCGAG GCTAGTTTTTAACCTTGGTAGTGTTCTTTCCCACTCTGGCTTGGACTTCCCCCGCAAAGC AAAGCCTATAGCCTTCACTCCCAAAGGGAGTTCACCAGCTAAAGCCATAACTTCCCATGC AATCTCATCGAAACCTTCATGTGGTTGTTTCTGACCAAGGGCATTCATACAGAAGATTTG AAAAGCCT |
| GenBank Accession | CR360335 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:16219267 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T18B22 |
| Hit Gene Code | At3g44670 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Disease resistance protein (TIR-NBS-LRR class) family |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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