SimpleSearch - Line and FST details


Line specific information

 
Line ID 814C02
Vector Used pAC106
Line Availability available as T3 set from NASC (N478074)
Segregation Analysis 50:7:7
Confirmed for Hit At2g21340
Parent of DUPLO pair 6875
Parent of pair(s) none
Note

Gene hit At2g21340

 
Sequence (A. th genome BLAST matches underlined) 
>11-K025642-022-814-C02-8409
GACATGAGCCATTACAATTGAATATATCCTGCGTGCATTATCGCACCACCAGTCACGTTT
GCTGATTTGAGTATTCTCTATAGCTTCTATGGGTCATTTGGTCACTAGGTTATGCTTCTG
ATACAGACCATGACTATGGAATGCTCCCTACATTGAGCCATGGATGATGAAGAAACTTTG
GGAGAAAAACAAGTGAAGCCCGTTGACGTATGGGATCCTCCCTATATTGAGAACGACGAG
CGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAA
CTACTTACCGTATGGGATCCTCCCTATAGTGAG
GenBank Accession CR399015 [GenBank]
Graphic View Graphic view of gene At2g21340
Predicted Position of Insertion Chr2:9135149 - go to primer design
BLAST e Value 1e-11
Hit Clone Code (BAC ID) F3K23
Hit Gene Code At2g21340 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MATE efflux family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At1g01050

 
Sequence (A. th genome BLAST matches underlined) 
>11-K025642-022-814-C02-8409
GACATGAGCCATTACAATTGAATATATCCTGCGTGCATTATCGCACCACCAGTCACGTTT
GCTGATTTGAGTATTCTCTATAGCTTCTATGGGTCATTTGGTCACTAGGTTATGCTTCTG
ATACAGACCATGACTATGGAATGCTCCCTACATTGAGCCATGGATGATGAAGAAACTTTG
GGAGAAAAACAAGTGAAGCCCGTTGACGTATGGGATCCTCCCTATATTGAGAACGACGAG
CGTGACACCACGATGCCTGTAGCAATGGCAACAACGTTGCGCAAACTATTAACTGGCGAA
CTACTTACCGTATGGGATCCTCCCTATAGTGAG
GenBank Accession CR399015 [GenBank]
Graphic View Graphic view of gene At1g01050
Predicted Position of Insertion Chr1:32956 - go to primer design
BLAST e Value 6e-14
Hit Clone Code (BAC ID) T25K16
Hit Gene Code At1g01050 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation pyrophosphorylase 1
Insertion Classification TS2TE (5')
Confirmation Status failed, line belongs to a contamination group, please check line 750E08


Last Updated on 10.06.2021 13:37