SimpleSearch - Line and FST details


Line specific information

 
Line ID 818D11
Vector Used pAC106
Line Availability available as T3 set from NASC (N478479)
Segregation Analysis 50:25:21
Confirmed for Hit At2g02780
Parent of DUPLO pair 2681
Parent of pair(s) none

Gene hit At2g02780

 
Sequence (A. th genome BLAST matches underlined) 
>84-K025607-022-818-D11-8409
NNNTTGAGTATTCGGACATGANCCATTTAAATTGAATATATCCTGACGCCGCTGGAGAAC
ATATATATTTGTATGCCGCGTCCTATACGAATAGATGACACTGATCTGACTGAATCAGAG
CACACCTGACTGTTCGTACTTCCCATCTCTGAAGATCCTGCAGCATCAACCTTCCCTGTG
ATGATTTGTATAAATATCGCTCCAAACTGGTATGGGATCCTCCCTATAGTGAG
GenBank Accession CR399477 [GenBank]
Graphic View Graphic view of gene At2g02780
Predicted Position of Insertion Chr2:782206 - go to primer design
BLAST e Value 1e-18
Hit Clone Code (BAC ID) T20F6
Hit Gene Code At2g02780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Leucine-rich repeat protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR399477 [GenBank]

Gene hit At1g54820

 
Sequence (A. th genome BLAST matches underlined) 
>84-K025637-022-818-D11-8409
CTCCCTGTAGATGACTCACGAAACAACGGATTATACTTACCTCTCCTCTACAATTATAAA
TATGATCACCTTGTGATATTTTATTAAAACAATTTCTACAAAGAAAAATCCTTCAAATGA
TATTTTCAAGTTTATGTTCAATTTGCAAAAATATTGTATGTTTAATCCACAATATAATTA
GCCGCCACTACATTAAGTTTGTTAAATTATGATAAATCATATATTAAATTAAAAAAATTG
TGACGAGGAGTATGGGATCCTCCCTATAGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNN
GenBank Accession CR399478 [GenBank]
Graphic View Graphic view of gene At1g54820
Predicted Position of Insertion Chr1:20448255 - go to primer design
BLAST e Value 6e-119
Hit Clone Code (BAC ID) T22H22
Hit Gene Code At1g54820 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Protein kinase superfamily protein
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37