SimpleSearch - Line and FST details


Line specific information

 
Line ID 821C03
Vector Used pAC106
Line Availability available as T3 set from NASC (N478747)
Segregation Analysis 50:32:30
Confirmed for Hit At3g22231
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g13920

 
Sequence (A. th genome BLAST matches underlined) 
>19-K025506-022-821-C03-8409
CGGACATNAGCCATTTACAATTGAATATGTCCTGACTACTGTTTAATTTAAAGCGAGAGG
AACGACAATCAGATCCTCATCCTACTGGGAACCTCATCTCTCCCGAGAGTGAGANNNNNT
NNNNCNNTNNNTGNNNNANNNNANANTCNNCATTNNANNNTANAAACTTCTTATCACATA
CTATTCACTCACTGACCTTCCTTACCCAAATGATATGTCTAGGTTTTTTGGTTATATCCA
ACCCTTATATAATTGCACACATCAGGCTCATGATATTGTTTGAAATGCACATTGGCACAT
GAAAGCGATACCTATGGTTTATATGAAAGTGAGATCATGGTTTGTTGCAGAAATGGCTTT
CGTCATGTATGGGATCCTCCCTATAGTGAGCATTCGGGTTTTGTGATTTCTCTGTCATAA
TGGTCCCGGCACATATGGTTCATAACCCATGTGGGCCTATGGTATAATTTTTCCTATTAA
AACTATTGTTAGGTCGATAAAATCAATTACTATGATATTGAGTGGAATACTTTTTTCTAA
ATT
GenBank Accession CR360551 [GenBank]
Graphic View Graphic view of gene At5g13920
Predicted Position of Insertion Chr5:4487461 - go to primer design
BLAST e Value 4e-52
Hit Clone Code (BAC ID) MAC12
Hit Gene Code At5g13920 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation GRF zinc finger / Zinc knuckle protein
Insertion Classification TS2TE (5')
Confirmation Status unknown

Gene hit At3g22231

 
Sequence (A. th genome BLAST matches underlined) 
>19-K025531-022-821-C03-8409
AGCCATTTACATTGAATATATCCTGGACATGTAGATTTGTGACGAGGAGAGAGTGTCTGT
GCTTCTAATTTAGGGGGTGGACGAATATTAGGAGATTTTTTACATTATTCATTATATGAA
AGAAAGAAGAGTCAATATTGAACAATAAAAACATCTAATCGCAGACAACTCACGGACAGA
CCTACCTTACCGAAGTGGTAGGTCTAGGTTTTTTGGTTATATCCAACACATATATAATTG
CAGAGATAAAGCACATGATATTGTTTGAAATGCACAAGGGCAGAGGAAAGCGATACCTAT
GGTTGAGATGAAAGTGAGAAATGGTTTGTTGCAGAAATGGCTTTCGTCACGTATGGGATC
CTCCCTATAGTGAGAATTCGGGTTTTGTGATTTCTCTGTCATAATGGGCCCGGCACATAT
GGTTCATAACCCATGTGGGCCTATGGTATAATTTTTCCAATTAAAACTATTGTTAGGTCG
ATAAAACAAAAAACAATAAAAACGAGTGGAATACACATACCAAAAAGAA
GenBank Accession CR360552 [GenBank]
Graphic View Graphic view of gene At3g22231
Predicted Position of Insertion Chr3:7846596 - go to primer design
BLAST e Value 1e-150
Hit Clone Code (BAC ID) MKA23
Hit Gene Code At3g22231 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation pathogen and circadian controlled 1
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37