SimpleSearch - Line and FST details


Line specific information

 
Line ID 852A11
Vector Used pAC161
Line Availability available as T3 set from NASC (N481707)
Segregation Analysis 50:33:29
Confirmed for Hit At1g77450
Parent of DUPLO pair none
Parent of pair(s) 2333, 97157

Gene hit At4g17620

 
Sequence (A. th genome BLAST matches underlined) 
>81-K025757-022-852-A11-8409
CTAAGAATTAATAAACCGGGTCTTACAATTTACAGACATGGCTTCGTATGGTATCCTCCC
TATAGTGAGACCTCCCTATAAATAGGCCAACCATTCTAAGGATAAACTCACAAAGTCTAA
ACCTTTCGCCATTTAAGCAAATCAGTTCAAGATAACATTACCATATCCCTTTTCATCTTG
ATGTAGAGATGATGGAGGAAGACTATTATGGGATCCTCCCTATATTGAGAACTCTTCNNG
CCGTATGNAATCCTCACTA
GenBank Accession CR402093 [GenBank]
Graphic View Graphic view of gene At4g17620
Predicted Position of Insertion Chr4:9824235 - go to primer design
BLAST e Value 3e-59
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g17620 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation glycine-rich protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g77450

 
Sequence (A. th genome BLAST matches underlined) 
>81-K025757-022-852-A11-8409
CTAAGAATTAATAAACCGGGTCTTACAATTTACAGACATGGCTTCGTATGGTATCCTCCC
TATAGTGAGACCTCCCTATAAATAGGCCAACCATTCTAAGGATAAACTCACAAAGTCTAA
ACCTTTCGCCATTTAAGCAAATCAGTTCAAGATAACATTACCATATCCCTTTTCATCTTG
ATGTAGAGATGATGGAGGAAGACTATTATGGGATCCTCCCTATATTGAGAACTCTTCNNG
CCGTATGNAATCCTCACTA
GenBank Accession CR402093 [GenBank]
Graphic View Graphic view of gene At1g77450
Predicted Position of Insertion Chr1:29100262 - go to primer design
BLAST e Value 2e-07
Hit Clone Code (BAC ID) T5M16
Hit Gene Code At1g77450 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAC domain containing protein 32
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37