SimpleSearch - Line and FST details


Line specific information

 
Line ID 869H08
Vector Used pAC161
Line Availability available as T3 set from NASC (N483420)
Segregation Analysis 50:45:44
Confirmed for Hit At3g13770
Parent of DUPLO pair none
Parent of pair(s) 735, 3624, 3792, 58746

Gene hit At4g25800

 
Sequence (A. th genome BLAST matches underlined) 
>64-K026114-022-869-H08-8409
GCATCTTAAATAAACTTTCCAGTTCAAGCTTTACTGAAGGCTATAAACAAACGCTGACGA
CAGCCCTACCTCATAACCCACAAGCACAATTTGATTTTGTTCCCCAGCAAGATCAGTTTA
TCGGAATACAGCAACCTCAAACTCAAACCAACATAGAGAATGAAAATGTAACTAGGTTGG
TTCTTGCTCCTCCACAATCATCCGCAGGTGGGTATGGCATCCTCCCTATAATGAGATGCC
TGAAAAGATGTCTTTTCCTGGACTGCTAGGGGCGCCGGCCAATATCAAGCTGTTCCATTC
ATCCGAAGCTCTCACTGTTTTTG
GenBank Accession CR404284 [GenBank]
Graphic View Graphic view of gene At4g25800
Predicted Position of Insertion Chr4:13127054 - go to primer design
BLAST e Value 9e-87
Hit Clone Code (BAC ID) F14M19
Hit Gene Code At4g25800 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Calmodulin-binding protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At3g13770

 
Sequence (A. th genome BLAST matches underlined) 
>64-K026082-022-869-H08-8409
CCGGACAGAAGCCATTTACATTGAATATTCTCAGAAGCAGGTCCATCTCTGGAAGCGTGC
GATCACGACAAACAAATCCAATCGAGTCTATTTCGGCTTTGCTTTGAGTCTGATGGACTG
CATGACACATCTTCTCAATCACACTTGTATGCTTTAAGGAGCGTCTTCATTAACTTTCTA
GTACAAGCTTGAATTAAGACCTACCACAAGAGCATCACTAGTTCCATACCTCACAAACAA
CAAGTACCCTTCTCATGCGGCCCGCAGCCTTAGCATGATATCAACGTCTGTTGACCTCTG
ACTCCTACTCAACATAGAGAATGTCTGTGCACCAATGATTGCTTTTAGGACCACCACAAT
CAACTGTTATGACTGATGCGGACCACTTCCACCGTTCCATATACGTAATTGAATCTGGAA
CCTGGCTGCATATAAACAGTTGACCCGAATAATCTTTCACGTTGGACAGTA
GenBank Accession CR404283 [GenBank]
Graphic View Graphic view of gene At3g13770
Predicted Position of Insertion Chr3:4519636 - go to primer design
BLAST e Value 1e-33
Hit Clone Code (BAC ID) MMM17
Hit Gene Code At3g13770 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pentatricopeptide repeat (PPR) superfamily protein
Insertion Classification 5' region
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37