SimpleSearch - Line and FST details


Line specific information

 
Line ID 875B07
Vector Used pAC161
Line Availability available as T3 set from NASC (N483923)
Segregation Analysis 50:44:39
Confirmed for Hit At5g40580
Parent of DUPLO pair none
Parent of pair(s) 8954

Gene hit F1C9

 
Sequence (A. th genome BLAST matches underlined) 
>50-K026521-022-875-B07-8409
ACAACTATACGATGTGGTCATTTACTTTACTAGATTAGGATTTTTGTACAACTGAATACA
AAATAATAAGACATGATGCTCTAAGTTGTTGTATGGGATCCTCCCTATAGTGAGAATTGG
AACTTGGGTACAATTTATAGTTAGACATGGATATTTAACTATTTCTGAATCGGATGTGCC
TCCTTTACACCATCTTCATTCGCATTACCTTCCTACTAACGGCTATGTATCGAAACGGGA
TCCCCAATTATTTGAGCGCAAGTATGGGATCCACCCTATACTGAGAGACTGATTAATGCT
CTTTCTTTTTTCGTCCACAACAACTGGGAACAACTCAACATTCTTACTCTTTTTCTGCCT
ATAATTAAAACTACTTGATCCAATCTCTATTGACATTCACTTTGTTCTGTANAAGA
GenBank Accession CR405039 [GenBank]
Graphic View Graphic view of sequence CR405039 of line 875B07
Predicted Position of Insertion Chr3:376130 - go to primer design
BLAST e Value 1e-27
Hit Clone Code (BAC ID) F1C9
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At5g40580

 
Sequence (A. th genome BLAST matches underlined) 
>50-K026467-022-875-B07-8409
GCCTTTTACCGTGAATATGCGAAGACACACTATCCGATATACTCATTTACTTTACTATAT
TACGATTTTTGTATAAATGAATACCAAATAATAAGACGTGATGCTCTAAGTTGTCTTATG
GGATCCTCCCTATAGTGAGACTAGCCTTTGCGTGCTACAATAGGTTCTTGGCTTGGCTTC
CTTGCTATTCCTCAATCATACCTTCCGCCCCTGTCCCATTATCATCTCCAACAATCTTTT
TCTTATCGAATATGTATGTAATCCATATTATGGGATCCTCCCTATAGTGAGTCNAACNAG
CTCTTTCTTACAAACAAAATTGTGCTCTTTCTTTTTTTGTCCACAACATCTTAAGACATC
TCATCATTCTTACTCTTTTTCTTCCTAGAAGCGAAGCTACTTGGTCCAATCTCTAGTGAC
ATTCTCTTTGTTCTGTANAAGACACCANATTGAGTTATTATAAGACACAATCAAAAGGAT
GATTGTAA
GenBank Accession CR405038 [GenBank]
Graphic View Graphic view of gene At5g40580
Predicted Position of Insertion Chr5:16248575 - go to primer design
BLAST e Value 9e-78
Hit Clone Code (BAC ID) MNF13
Hit Gene Code At5g40580 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 20S proteasome beta subunit PBB2
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37