SimpleSearch - Line and FST details
Line specific information
| Line ID | 878C11 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 3292, 6979 |
| Note |
Gene hit At2g34880
| Sequence (A. th genome BLAST matches underlined) | >83-K114415-0022-878-C11-8409 CCTGCCCAGCCGCTAGCGGACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTC TTTCTTTTTCTCCATATTGACCATCATACTCATTGCTGATCCATGTAAATTTCCCGGACA TGAANCCATTTACAATTGAATATATCCTGATGGATGCATCCTCACATATCTCATAAAATT TATTACACTCTCCATTCAAATCAGAACATTCTTCTTGTACCTGCTTTTCCTTAACGATAA TCCCCCTCACCTGCC |
| GenBank Accession | HE665014 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:14712437 - go to primer design |
| BLAST e Value | 9e-36 |
| Hit Clone Code (BAC ID) | F19I3 |
| Hit Gene Code | At2g34880 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transcription factor jumonji (jmj) family protein / zinc finger (C5HC2 type) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit F7A10
| Sequence (A. th genome BLAST matches underlined) | >83-K026470-022-878-C11-8409 AGCCATTTACAATTGTATATATCCTGTATCTCTTGGTAATTAAAGTTCATGTTTCACATT TCCTGAGCCGAATTTGAGTTGATAGCATTTGAACTTGATTTTGTCTTCCGCGTATGGGAT CCTCCCTATAGTGAGCCTTATCCCTCACCCATTTGGATCCTATCATTTTATAATAACGCT GCGGACATGTGATCCTCACTAGAGTGAGAGAGATTGAATACTTCCCTACAAATCGCCTCC AGACCCTCTCATCTATCCGAGACCATCATATAACCGCCTTGGTTGATTCCTGCTTCTAAC ACTGTAACCTTCCAGGTATGAGATCCTCCCTATAATAAGACCTCAACAAACATCTGTAGA TAGTATAGACTATCAAATCCCACCAAGATATTAATCATACACAATAATCTAATACATA |
| GenBank Accession | CR405403 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr1:20597315 - go to primer design |
| BLAST e Value | 1e-24 |
| Hit Clone Code (BAC ID) | F7A10 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At2g40890
| Sequence (A. th genome BLAST matches underlined) | >83-K026524-022-878-C11-8409 TATCGATCTGGATCGGTTCGGTTCTTAACGTGCACGTATCTATTTCCGAGCTCGAATTTG AATTGCTGACAGATGACCTTGATATTGCCCTCACCGGATGCGAACCTCATCATCGTGAGC CTTAACCCTCACCCATTTGGATCCTATCTTTTTCTATTATGGCTGCCGATATGTGAGGGT GCCTAAAGTTAGCGCGCTTGAACTCTTCACACCGAGACGACTCGAGTCTCTCCGACCTAT CCGTGAAGATGATGTCACCGCCTTGGTTGAATCCGTCTTCAGACACTGTAACCTTCCTGG TATGGGATCCTCCCTATAGTGAGACCTCANGGACCTTCGCTGACTAACTGGTTCGTATTT ATCGCCCAAACACGGGACCATAAGATATTGGTTATAGCTTAACTGTGTGGGCTGTCACAT GTAAGTTCTGCTTGATATTCACT |
| GenBank Accession | CR405404 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:17060325 - go to primer design |
| BLAST e Value | 2e-41 |
| Hit Clone Code (BAC ID) | T20B5 |
| Hit Gene Code | At2g40890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | cytochrome P450, family 98, subfamily A, polypeptide 3 |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
