SimpleSearch - Line and FST details
Line specific information
| Line ID | 878G05 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6711, 6713, 6739, 10726, 10734, 10748, 10751, 10757, 72910, 72946, 72980, 73008, 73039, 73069, 73098, 73152, 73180, 73205, 73295, 73319, 73341, 73342, 73344, 73345, 73346, 73347, 73348, 73349, 73350, 73351, 73352, 73353, 73354, 73355, 73356, 73357, 73358 |
Gene hit At3g00370
| Sequence (A. th genome BLAST matches underlined) | >39-K026524-022-878-G05-8409 NNTTTCGCCTATTCGGACATGAGCCTTTACATTGAATATATCCTGCCTACAGTGAAAGTT TTCTATTATTTCGTTAACAATACAGGAGAGTTTTTTTGTGTCATTAAAAGATATTTATCA AAACGGCCCAAACCATGTTTGAGACCGAACGTTATCCAAAGCTGTAATCCTTAACGGTAG TGGGATCCTCCCTATAGTGAGACCGATTTTTACTTTTCTTTTCCTCCCTTGTATTCGAAA AACGAAGGAATCGAATTAATGAGAGTCGTGCTTCAAGGAATCTACACCCTGGGTGATAGT GCCAAAAACACCCTACGTGATATTCTCTTCTCCGAACTCTTCTCCTCAGATTCTTCATAA TCCTAAACTATCGGGGAAATCTCTTTTCGTTGAAGTTGCAGAAAAGTAATGGTCTTCTGT TTGTATCTTGGGAGATTAAAGGGGGAATCCATTCCTATGGGAGGAGATTGAGTATCCACA ACTGCGAATCTAATTAAGCTTATGTAATATCAAATTAACGGATCACTTTTACTTTTGCTC CTTGATTCTTGTC |
| GenBank Accession | CR405465 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:6390390 - go to primer design |
| BLAST e Value | 3e-25 |
| Hit Clone Code (BAC ID) | K24M9 |
| Hit Gene Code | At3g00370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | novel transcribed region |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
| Other FSTs Supporting this Hit | CR405465 [GenBank] |
Gene hit At3g07780
| Sequence (A. th genome BLAST matches underlined) | >39-K026470-022-878-G05-8409 GTATCGGACATGACCATTTCAATTGATATATCCCGCCTTCGTGATTGCCGCCGGAAACCT TCAACTTTTGGTGACTTTTTTAGAGGCGTTCAACGTTTGTTCGAATCGGTCCAAACAAGT TTTAACCAACCCATTTCCTATGGGATCTCCCTATGTGAGGGGATCCTCCCTATAGTGAGA GAGCTCTTTATTCTATCCACCGTAGATTCCTCAACGTCATTATAGTATGAGAGTGCGCAT TACACTCACTAAGGGAGGTCCCTGAACTCTATTGGGGGATCTCTGATCTTCTATTTCAGG GACC |
| GenBank Accession | CR405464 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:2484394 - go to primer design |
| BLAST e Value | 5e-11 |
| Hit Clone Code (BAC ID) | MLP3 |
| Hit Gene Code | At3g07780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | potyvirus VPg interacting protein (DUF1423) |
| Insertion Classification | Promoter |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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