SimpleSearch - Line and FST details
Line specific information
| Line ID | 891B01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N485453) |
| Segregation Analysis | 50:36:33 |
| Confirmed for Hit | At4g25370 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At2g33350
| Sequence (A. th genome BLAST matches underlined) | >95-K030259-022-891-G12-8409 TCCCTATAGGGTGTGGTATTTTCCCGTTACAATCATACATATACCTATGGACTTTTGGTT TTATGTGTATGTATAAATTTGTATAGACCAGACTCTTGTGTGTGTGTTTCGGTGTCTGTA TTATATTCTCCCTTACTTTTCTTCTATTATTAATTCCACAGGGTTGCGGCAAGNGGAAAA CCAAGAATAAGAGACGGAGTGAAAATGAAAAGAAGTGAATAAAAGATTCAAAGCAAGACT TGAAAAAGATAAAGGGAAAAAGAAAAAATAAGGGGGCAGGAAAAAAAGAGGAATTATTAT AAAGTGCGTTCAGCGAAGAGTAAGGAAAAGAAAGGATGAAAAAAGTATATAAGAAATTGA AG |
| GenBank Accession | CR935478 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:14133942 - go to primer design |
| BLAST e Value | 9e-13 |
| Hit Clone Code (BAC ID) | F4P9 |
| Hit Gene Code | At2g33350 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | CCT motif family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At4g14610
| Sequence (A. th genome BLAST matches underlined) | >02-K114616-0022-891-B01-8409 GCATGTGTAATATCCGATCGAATTGGCATATGGAAGTGTGAAATGAAGGAGATAAAAGTC GAGATGAGAACATCATCATGCTTCTCTAACCTGCCCGGCCGCTAAACGC |
| GenBank Accession | HE665363 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:8381383 - go to primer design |
| BLAST e Value | 6e-35 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g14610 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit At4g25370
| Sequence (A. th genome BLAST matches underlined) | >02-K114617-0022-891-B01-8409 ACNTCNAAATAAGATTTCCGAATTAGAATAATTTGTTTATTGCTTTCGCCTATAAATACG ACGGATCGTAATTTGTCGTTTTATCAAAATGTACTTTCATTTTATAATAACGCTGCGGAC ATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATTGAC CAACATAAGGCATTCCACAACCGACTTATACAGCATCAACTTAATGATTAAGAAACAGGA CAACTAATCATAAAAGCTCTTGCTTATGCAATGCTTGGATTCAGTTAAAGCTCAGATGAG CTGAAGCACACACTTAGCCGAAACAATCTCACCAGCATTATTGTACAGAATCCCTCAAAA CTAAAATACAAGCTTTCACAATGACAAAGCATAAATATCCAAAGCAACATAGTGATCCTT AGAAATCAAAATCTAAACTAACCTGCCCGGCCGCTACA |
| GenBank Accession | HE665364 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:12973801 - go to primer design |
| BLAST e Value | 5e-146 |
| Hit Clone Code (BAC ID) | T30C3 |
| Hit Gene Code | At4g25370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Double Clp-N motif protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR935479 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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