SimpleSearch - Line and FST details


Line specific information

 
Line ID 894G04
Vector Used pAC161
Line Availability available as T3 set from NASC (N485804)
Segregation Analysis 50:49:42
Confirmed for Hit At5g14490
Parent of DUPLO pair 12580
Parent of pair(s) none

Gene hit At1g48240

 
Sequence (A. th genome BLAST matches underlined) 
>31-K112794-0022-894-G04-8409
AAAACTGATATCTTGGAGAAAGTAATACCTTTTACAGTCTCTCATCTTCGTCTCAAGTTC
TTCGAGTTACTTGCTTTGTCTACGTAACCTGTCCGGCCTCTACTTTCATTTTATAATAAC
GCTGCGGACATCTACCTTTTTGAATTGAAAAAAAATTGGTAATTACTCTATCTTTTTCTC
CATATTGACCATCACACTCATTGCTGATCCATGTATATTTCCCGGACATGATACCATTTA
CAATTGAAAAAAACTGATATCTTGGAGAAAGTGAATACCTTTTACAGTCTCTCATCTTCT
CAACAAGTTCTTCGAGTTGCTTGCTTTGTCTACTACCC
GenBank Accession FR817431 [GenBank]
Graphic View Graphic view of gene At1g48240
Predicted Position of Insertion Chr1:17811029 - go to primer design
BLAST e Value 2e-36
Hit Clone Code (BAC ID) F11A17
Hit Gene Code At1g48240 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Putative plant snare 12
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g14490

 
Sequence (A. th genome BLAST matches underlined) 
>31-K112793-0022-894-G04-8409
ATTGATACCAACATCTTGAGTGACTGAACATATAAAGTCTTGGATAAGAAGATGTGGTTT
TAAGCCATCAATACCACACTTAGCTTCCAAATGCTCAATCACTTCCTCAACGGTTGGCTC
GAATTTCACACCTTTAGGAAGGCCTGGCCATGGAGTCAGTACCTGACAAAGCAAAATAAG
AAAAATACTATCTCAGTATTCACATAAACAGGGCCATAAGCTCTAACCTGCCCAGCCGCT
ACCNTTTACAATTGATACCAACATCTTGAGTGACTGAACATATAAAGTCTTGGATAAGAA
GATGTGGTTTTAAGCCATCAATACCACACTTAGCTTCCAAATGCTCAATCACTTCCTCAT
CGGTTGGCTCGAATTTCACACCTTTAGGAAGGCCTGGCCATGGAGTCAGTACCTGACAAA
GCAAAATAAGAAAAATACTATCTCAGTATTCACATAAACGGGGCCATAAGCTCTAAC
GenBank Accession FR817430 [GenBank]
Graphic View Graphic view of gene At5g14490
Predicted Position of Insertion Chr5:4671669 - go to primer design
BLAST e Value 3e-121
Hit Clone Code (BAC ID) F18O22
Hit Gene Code At5g14490 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAC domain containing protein 85
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37