SimpleSearch - Line and FST details
Line specific information
| Line ID | 908D01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N487109) |
| Segregation Analysis | 50:50:41 |
| Confirmed for Hit | At1g58270 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At1g58270
| Sequence (A. th genome BLAST matches underlined) | >04-K101543-0022-908-D01-8409 ATTCGGACTGAGCCTTTACATTGAATATGGATCAATTGAAGCCATTTGCGACGATGAGTC ACCTAAGTACTATCTCCCGTTAAAACATTAAGAGACGATTGATGAGAGTAGTAGTCGGTT TTCGAGAAGGACAAGATCTGGACTTCAAGTTTGAGAGTATCGTTGACTATGGGATCCTCC CTATAGTGAGTCGTTTTGCTC |
| GenBank Accession | CU457929 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:21612379 - go to primer design |
| BLAST e Value | 6e-60 |
| Hit Clone Code (BAC ID) | F19C14 |
| Hit Gene Code | At1g58270 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | TRAF-like family protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CT026401 [GenBank] CU457928 [GenBank] CU457930 [GenBank] |
Gene hit At4g02660
| Sequence (A. th genome BLAST matches underlined) | >04-K030969-022-908-D01-8409 ATATTTGCTGGTTCACCGAAAATCTGCTTTGGAGGATTTGTTCGTCAACCAATCTCCTTA GGTACAGAAAGTGGAAGAATGTNATCATCCTCATANCGTTTCCCCTTCTTTAGTTGTTTT AGTATGGGATCCTCCCTATAGTGAGTGGTGAGAAGGGCGTTGAATAAGACGGCGAACAGG AGAAATAAGGGAAAAAGGATGCTAATATGTATGGGAAGAATAAAAAAGTATATATTTTGA ATATTGATTCTGGGAGAAGACGATGGACAAGGGAATAAGATTTAAATGAGGTAAAATAAA AAAATATGATTTAAGAGGGATAAGAGTAATATGAAAAGGAACAAAGAGAAATAAAAAAAA GAGACAATAGTAAGATATAAATTGAAGAGAGATAATATTTAAGCGAACGTTAATTAAAAG ACATAAAAATAAAGTGACTAAAAATTGAATAAGGAGTTGATGGACTACATTGGAAAAATG AGTCAAAGAAGAGAATGTAGGGAAAGATGTGGTTAAGAAGATATTAAGGAGGCAATAAGA GGAAATATTAGTAGAATAAAGAATTAGATAGGAAATAAGGAGAAGGAGGTTCTATTAAGA AAATGACTATATGCAACAAAACGGTAGGATGATATTGAAGGAGAGTATGATAGTTATAGA AAGAGTAGAAGATATTAGATTATGCGAGAGAAGATACAAATTAGAACAAAGATATTATGA AATACATGATAAACGAACAATAGAAGGAAAAATAGTAAATAAGATATAAAGCTTAGAATT ATAGATAAGTAGAGGCAGAGATCGATAAAAGCATAGAAAAAAAATATACGATATATAGAT GGATAACTCATAATAGTCAAAAGGAGATAAGTACGAAGCGAAAGAAAATTTTAGATACAT TATGAAAAG |
| GenBank Accession | CT026403 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:1164058 - go to primer design |
| BLAST e Value | 5e-16 |
| Hit Clone Code (BAC ID) | T10P11 |
| Hit Gene Code | At4g02660 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Beige/BEACH and WD40 domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
| Other FSTs Supporting this Hit | CT026403 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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