SimpleSearch - Line and FST details


Line specific information

 
Line ID 908E11
Vector Used pAC161
Line Availability available as T3 set from NASC (N487131)
Segregation Analysis 50:49:36
Confirmed for Hit At3g12780
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit F21A14

 
Sequence (A. th genome BLAST matches underlined) 
>85-K030967-022-908-E11-8409
TGGGATCCTCCCTATAGTGAGTCGTATTACGCACTCCCATGTTCCTTCCGCACTGTTCAC
TACGGAAACCTTGTTACGACTTCTCCTTCCTCTAAATGATAAGGTTTAGTGGACTTCTCG
CGACGTCGCGGGCGNNNATTCATCCACGTCGCCTCAATCCTAACACTTCTCCGGATCATT
CAATCGGTAGGAGCGACGGGCGTTGTGTA
GenBank Accession CT026437 [GenBank]
Graphic View Graphic view of sequence CT026437 of line 908E11
Predicted Position of Insertion Chr3:14199545 - go to primer design
BLAST e Value 8e-55
Hit Clone Code (BAC ID) F21A14
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit CT026438 [GenBank]

Gene hit At3g12780

 
Sequence (A. th genome BLAST matches underlined) 
>85-K101541-0022-908-E11-8409
TTTACATTGATATATGATCAAAAAGATAATCGCTTTTTGAACCTCTCATCAGTGATAAGA
GAGAAATATTCCAAACTCATAAAATCTCAAATGGCTAATAAATAAGAACATTGTGAGTCA
CTCTCTCTGTTTCTCATCTCCTCATCTTTTTATCTTCTTTGATTGATCCACATGGCTTCC
GCTGCCGCAAGTTCCGCCTTTTCACTCCTTAAGTCCACCGGCGCTGTTGCTTCCTCCGCC
GGAACTCGCGCACGTGCCTCCCTTCTGCCAATTCCCTCTACCTCTGTTTCCGCGCGTCCA
CTATGGGATCCTCCCTATAGTGAGACGTATTACTCACTGGACTACACTGAATTGGTAGCT
CATTGGGCTACGCTCAATTGTGAACTGATTGCGCACGGGGGTAATCCGAGCAGAGTGCCG
AAGGGAAAACCCCGGGACCAAGGGATAATGGCGCCTCCCGAGTCCTTGGGATTAAGGGCC
CCACGGAAACGGGGGATTCAGGGTTATGGGGAGCAACCCCACAAGAAGGAAAATAAGGAC
CACGCAGCAAAGGGGAGAATAAAAAAGTAGCGTCGATAAAGAAAAATGACCCAGGGGGGA
CGAGGGGGACACTACTAAAGCGGAGAAATGTAACTTGGTCGGTAAGAGAGACGAGCATAG
TAAGGGAACAATGAAAAAGCAAAAGAGCAACAACCGAAAACTTAGATAGAGGAATACGGT
AGGAATATGTCTGAGCTGTTTAAGAACAGATAATAAATAATAAAAGATCATGGGAAAGTA
TATGAAAAAGACGAGAATGCCACATGATGACGAGATATAGTATCAAATGAAGATGTGCCG
ACAATTAAGAATTAGATCTATAGATACAGAGTATTTGAGAACCAAGTTGAGTGAGATAAA
TGAACAGTGTACACTCAAAGGTAATAGTACGAATTACTGATTACTTCTAATGTATGAAAG
TA
GenBank Accession CU457940 [GenBank]
Graphic View Graphic view of gene At3g12780
Predicted Position of Insertion Chr3:4063301 - go to primer design
BLAST e Value 6e-158
Hit Clone Code (BAC ID) MBK21
Hit Gene Code At3g12780 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation phosphoglycerate kinase 1
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CU457940 [GenBank]


Last Updated on 10.06.2021 13:37