SimpleSearch - Line and FST details


Line specific information

 
Line ID 928E03
Vector Used pAC161
Line Availability available as T3 set from NASC (N489043)
Segregation Analysis 50:50:39
Confirmed for Hit MVI11
Parent of DUPLO pair none
Parent of pair(s) 3836, 3838, 3867

Gene hit MVI11

 
Sequence (A. th genome BLAST matches underlined) 
>21-K113943-0022-928-E03-8409
CACAAAACCAAAATCCATTGCTGATATAAAGCCATTTACATTTGTGCCGCTCACTGGAAC
AAAAACGCACGTTAAGGGATTTTGGTCACGAGAGTATCTTACAGGATCTTCACCTACCCC
GCACGGCCGCTATTTTGAATTGAAAAAAATATTGGTAATTACTCTTTCTTTTTCTCCATA
TTGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACAAT
TGAATATATCCTGGAACGAGAAATCCATTGCTGATCAAAAAGCGGTTTATTTTTTTTCCG
CTCAGTGGACCTAGAACTCCCGTTTAGGGATTTTGGTGATAAGATTATCACGACCGATCT
TCACCTTGAATGTCAGGCAGCTAAAAAAANNNNTTNNNTTNGAGGTGGTGTGTGAATGGA
CTTCCAAAATGACGTGGCTACGGTAAAAAAGAGAGAATCTTTTCACTTTCATGAGACAAT
GCCACGTGTCGATAAATGAACAGGCCACCTAACCTGCCCGGCCG
GenBank Accession HE666287 [GenBank]
Graphic View Graphic view of sequence HE666287 of line 928E03
Predicted Position of Insertion Chr3:6673978 - go to primer design
BLAST e Value 6e-53
Hit Clone Code (BAC ID) MVI11
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Other FSTs Supporting this Hit CT954674 [GenBank] CT954675 [GenBank]

Gene hit T17J13

 
Sequence (A. th genome BLAST matches underlined) 
>21-K113942-0022-928-E03-8409
ATCCTTACATTTATATAACACACATTGGATCGTTATTTTATTGTATTTTGCTGATTACAT
CAAAAACAAACGCATTTATTAACCGAAACCATTCAAATAGATTGATTTGTTCTAACCTGC
CCGGCCGCTAATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCT
CCATATTGACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTT
ACAATTGAATATATCCTTACATGTATATAACACACATTGGTCGTTTTTTTATTTTATTTT
TCTGATTATATCGAAAACAAACACTTTATTAACCAAACCAGTCAAATAGATTGATTTGTT
CTAACCAGCCCGGCCG
GenBank Accession HE666286 [GenBank]
Graphic View Graphic view of sequence HE666286 of line 928E03
Predicted Position of Insertion Chr3:23049127 - go to primer design
BLAST e Value 1e-26
Hit Clone Code (BAC ID) T17J13
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37