SimpleSearch - Line and FST details
Line specific information
| Line ID | 929A02 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N489090) |
| Segregation Analysis | 50:50:50 |
| Confirmed for Hit | At5g06780 |
| Parent of DUPLO pair | 6781 |
| Parent of pair(s) | 88815 |
Gene hit K19B1
| Sequence (A. th genome BLAST matches underlined) | >09-K113508-0022-929-A02-8409 TTGGTTGTCTTTAAAATTTATCATTTTTATAAATTTGCCCATTGAATCCCCCTAACCTGC CCAGCGACTAAAATTTGTCGTTTTATCAAAATGTACTTTCATTTTATAATAACGCTGCGG ACATCTACATTTTTGAATTGAAAAAAAATTGGTAATTACTCTTTCTTTTTCTCCATATTG ACCATCATACTCATTGCTGATCCATGTAGATTTCCCGGACATGAAGCCATTTACAATTGA ATATATCAATTGGTTGTCTTTAAAGTTTATCATTTTTTTAGATTTTCCCATTGAATCTCT CTAACCTGCACGGCCG |
| GenBank Accession | HE666331 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:25078197 - go to primer design |
| BLAST e Value | 2e-06 |
| Hit Clone Code (BAC ID) | K19B1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At5g06780
| Sequence (A. th genome BLAST matches underlined) | >09-K031618-022-929-A02-8409 ATGTTTCTCAGACCAATCGGAGTCATAGCGATCATCTGTTGTGCTACCTGGAAAAACTCG TCGTGTAAAAACACGGCAAGCGGTATTTGTATGGTGTCCTCACACCATAGGGGATCCTCC CTTTAGTGAGACCCTTTTTTTTAAACTCCGGTGGGGTTTCGAACCCTAGAACTGTTAGAT CTCTCAATGGACAAAAGATAAATGTCTTAAATCGCTCAAACTAAGTATGGGATCCTCCCT ATAGTGAGACCTATTGCTCGTCGTGTTTGGGGGGG |
| GenBank Accession | CT954697 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:2096533 - go to primer design |
| BLAST e Value | 1e-27 |
| Hit Clone Code (BAC ID) | MPH15 |
| Hit Gene Code | At5g06780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Emsy N Terminus (ENT)/ plant Tudor-like domains-containing protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CT954697 [GenBank] |
Gene hit At4g27100
| Sequence (A. th genome BLAST matches underlined) | >09-K031617-022-929-A02-8409 CTGGTATAACTCTNAGTGTAAGAAAATGGCANGCNGNATTTGNANGNNANCCNCCANANN NNGGGNNNNNNNANNNNNNNNGNNNNCNNNNNNNAGGNNNNNGNGGGGGGGGGNNNNCGG AAANNGNNNNNNNNCGAAAGGGAGGAAAAAGAAAGGGNGGAAGGGGCNAGNGGGGGAGAG GAGGGCGGGACAACGGGGGGGGAAGGGGAGAGGAAGGAGAGAGGGGGAAGAGGGAGGGAG GGGGGGAGCAGGAGAGGGAGGAGCAGGAGCGAGAGAGTCGGCATGGGGTGGACGGGGGGG CGACCGCGGGAGGAGGAGGGAGGAACGGCGCAAGACAAGAGGCGGCGTAGCGAGTATCAA AGGGAGGGAAAGGACGCGGCAATCGAGAGGGGACCGGAGAGGGTCAGGGGGAAAAGAAAC AGGCGAGCGCGCGGAAGGGGAAACGGAATAAGAGGACGGGCAAAGGAATGGAGGAGCAGT G |
| GenBank Accession | FR817958 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:13596464 - go to primer design |
| BLAST e Value | 2e-05 |
| Hit Clone Code (BAC ID) | T24A18 |
| Hit Gene Code | At4g27100 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ypt/Rab-GAP domain of gyp1p superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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