SimpleSearch - Line and FST details
Line specific information
| Line ID | 933H06 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2870, 56804, 91482, 91483, 91484 |
Gene hit At5g54140
| Sequence (A. th genome BLAST matches underlined) | >48-K031918-022-933-H06-8409 ACCATTCTCAAGATGCCGTGCCCCCACGCACTGATGATCAACCGCGCATCGAGAGTGATC CACACTGCGGACTTTTAAACCTCATCCGGCGAGATGGTGTTGCTATAGAAGCGATCCATC CCTTGAGATCAGACGACGCACCGGGCAGGCGCGCAACTAGATCGCAAAGTATTTGAACGC AGGTATGGGATCCTCCCTATAGTGAGAACCGACGTCTAGTAGCTTGTGATCAATCACTGT TGCTGGATACATAGGATGATCGTCTTCATGCATATCTATATCCGCTTTGCATCTTTGTAT GGGATCCTCCCTATAGTGAGANNNANTNNNNNNATNNNTANTATTAANNTTNNTTTNNTA NNATAAATATTTTATTAATAATATTATAATGAATNTGATAAATATTAATAAGTATATAAT GTAAATTAGTGTTTAAATATTTTAATTATAGAAATTATATCTAATATTAGATTGTTGTTT AATAAATATGATTATAAAAAAATTGAATTGTTTTAATTTGGTTAATTAATATTATTTTAT TAGAAGGGTTAAGAATGAGAAGATAATTATTGAAAGATTGTAGAAAATTATAATTAAATT TTGTTAAAAATAATTATGGATAATAGTGTATAGGTTATTAATGTTAATAGGGGTCAGGGA TATTATGAATATATATNAAGGTGTTTTTAAATTGTGACTAGATTGTTGCTTATTTGAGTT ATTTAGCTTTAATGTGTTATGGCACTGGCAAGATAATCTGACTACCATACTAGATTGTGA TATCGAAGATGATAAGATTGCAACGGCTACAGGTGCAGACTAAGAAGCCTTTTACCGTGC CACTACTTTATTAAATACTTCAGATAGGGACATATTGTATAGCATCCTACGAGTCCTAAG ATTTAGTGAATGAGACAAAAGTATACAAATACGTCGTGGTCGACGCGATATCCAGTAACA CAACGACTTTATCCAGAGCCGTTACAATCAAACTTTAACCCTCTCTGTCGAGCCAAAGTC CCTCTCCTACGCATTCGTTATACTCTACTCCTTGTAATTTTGTATTATTAACTNTCGACG GATTGANGTACAAGATCATCTCCATTCG |
| GenBank Accession | CT955086 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:21967839 - go to primer design |
| BLAST e Value | 3e-33 |
| Hit Clone Code (BAC ID) | MJP23 |
| Hit Gene Code | At5g54140 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | IAA-leucine-resistant (ILR1)-like 3 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
Gene hit At1g31390
| Sequence (A. th genome BLAST matches underlined) | >48-K032034-022-933-H06-8409 CATTTACATTGAATATATCCTGCCGACTATGATGGCGTAACTCCGATCGGAGGTCTACTC TCAGACTCTGAGGGAACGAGTTAGCTAGTAGGAGCCTATGCGTTCGTCCCATTGGCAAGT TCACGTACGCAGACGATTCATATTCGAACCTATTTGAGAGTCAAGAGACGCTACTTTTAA AAGTTGTTCTGCGACATTAGAAGGAACCGGATCTGATCTGCCGTAAGAAGAGACGATCCA CCCCGGCGACTATCTTGATAATCGAATTCACCTTCTCGCGGCCAAGGTATACTCCCAAGA CCTTTTCAGTGAATTCGTGTAGCTCGTGATCGGTCACTGTTGCTGGAAACATAGGATGAA CGTCTTCATGCATATCTATATCCGCTTTGCATCTTCATAGGGAATCCGCCATATAGTGAG AGATATTTGTATGTCCGATTTGGGAAAAATCACTGTAACAAAGACATACGTTTTGCAACA GGAATAAAGTCGCTGCTACACCCAACAGTAACCCAAGATTAGGAAGACAAAGTTCTCAGA ACTAAAACGAAAGACAAACGGACCAGACACCGATTAGATCCAAAAAGCTAAGTCTT |
| GenBank Accession | CT955087 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:11244678 - go to primer design |
| BLAST e Value | 3e-65 |
| Hit Clone Code (BAC ID) | T19E23 |
| Hit Gene Code | At1g31390 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | TRAF-like family protein |
| Insertion Classification | 5' region |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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