SimpleSearch - Line and FST details
Line specific information
| Line ID | 936E04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N489812) |
| Segregation Analysis | 50:43:29 |
| Confirmed for Hit | At1g73650 |
| Parent of DUPLO pair | 6877 |
| Parent of pair(s) | none |
Gene hit At1g73650
| Sequence (A. th genome BLAST matches underlined) | >29-K113945-0022-936-E04-8409 GTGGGTGTTTTCTATCTACTTATTCTGTTTCGATTTCTTCTTTTATATCTTACTTTAATG TTGGATGATTTTCGCTTCTCTTTGTTGTATGTGTGCAAGAAAGTTAGGGTAGACTCCAAA ACAGCAAAGAGAAAGAAGTAAAAGATGACTGATTTGTGATACTCATATTTGAGTTATTGT TCTTCACAACACTCTTTGATAAAATTTGTGTAAAAAATTGCCCGTAAGAAACTGAATTTG TTTGAAATATTGGACAGTCTTGACAGATTATCTCAGTTGTATTTGGTTCTTTTTTTTATG TGATTTTGTTTTTTGGTTAAAAAAAGTTCCCATTCCAAGAATCGAACCCGGGTCTCCTGG GTGAAAGCCAAATATCCTAACCGCTGGACGACATCGGATTTGATTATTTGATTATTTAAT TACTTTATATGTTGATTTTCATATTTATTTGGATTTAATTGTATGATTTAAATTCATGTA CTCAACCTAACCTGCCCGGCCGCTAAAANNNNNNNNNNNCNNNNNNGNNNTGGTGGNNNN GNNGNGGGGGGGGGGGGNGGGTGGGGGGGNGGGGGGTCCNGGCGGGCGNGCNGGGCGGCC CGGNCTTCGGTTTCGTGCNTTCGGTCGCCCGGCGGTTGTTTTGTTGTTGGTTTGTTCTCT GCCTCCTCCTCTGCGCCGCCTTTGGTCTCTCTGCGCTCTGGTGGTGGCTTCTCTCCGTCC GCCCCTCGCGCTCCCGGTTCTTATACNGTGCTTTTCTTGTTTTGAGCTACCACGCGCGGA TCTCCGCCCGTTCTGCCGCTGTTGGGCTCTCCTGTCGGCCTTTTGCTTTCTCTCTACAGG TTATCTCTTGTTCTCTCTTGCGCTGTTTTTCTTC |
| GenBank Accession | HE666586 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:27688648 - go to primer design |
| BLAST e Value | 1e-134 |
| Hit Clone Code (BAC ID) | F25P22 |
| Hit Gene Code | At1g73650 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295) |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g11880
| Sequence (A. th genome BLAST matches underlined) | >29-K113944-0022-936-E04-8409 NTGNNTGTACACGCGTCCAAAATAGATGTCCGAGTTGCAACAATTTATTTATTGCTTGCA CCATATAATACGACGGAGCCTAGTTTGTCGTTTTATCAAAATGTACTTTCATTTTAAAAT AGCGCTGCGGACATCTACATTTTTGAATTGAAAATAAATTGGTAATTACTCTTTCTTAAA TAGAGAAATCATAAAAAGAATCAACATAGTCTGATCTAACCTGCCCGGCCGCTAAANNNG TGCTATTTGNAANGNNNNGGGNTNNGTGTGNGGGGGCTTTGGCGACGCCGGGTGGGGTTG AGGTGNGGCTTCCGCTTCTGATAGTGAAAAAAAAGGTATGGTAAGTAAGGCCGTTGTNTA ATTTTTGAGGAACCTTGTTAGGAATGCCAGGGTTTACTGAATGACAGTACATAGGCCAAA AAACAAGAAAAGAAAGACTCGGAAAGTGCGTGGTGCGCCCCGCTGCTGGGAGTCAGTCGG ATGGGACACAGTCTTGGCTCTATCAAATAAAAACAAAGGGCTGTGTTAGCGTCCAGGTGG CGGTTCCCGCAGAAACCGTAGTTGTGCATGCCCGAAAGATTACTACGTGAGATAGGAGAG AGCCTACGAAAAAAAAACAAATACAAGAAAGTTATAATCAATTAGACGTGCGCTGTCGCT ATAAAACTCTTGTGCGACAGAAAGTGTATTAGGATCATTGCAAGAACGTCGATTATTGGC TGGATTGATCGAAATGTAGAAACGCCATCATTTGAAGGTGTATACAAGGTTGGAACCATA |
| GenBank Accession | HE666585 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:7145329 - go to primer design |
| BLAST e Value | 4e-14 |
| Hit Clone Code (BAC ID) | T26M18 |
| Hit Gene Code | At4g11880 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | AGAMOUS-like 14 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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