SimpleSearch - Line and FST details
Line specific information
| Line ID | 950G06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N491182) |
| Segregation Analysis | 50:45:34 |
| Confirmed for Hit | At5g38430 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At5g38430
| Sequence (A. th genome BLAST matches underlined) | >47-K102149-0022-950-G06-8409 CATTTAAATTGATATATGACACCCTTATCTTATCTTTCTTTCCCGAGGAAATGAGTGATT GTGTATGGTTTACTATGGGATCCTCCCTATAGTGAGTCGTATTACTCCCCCGCCCCCCCC GACCCCATCTCTGGAGGGGCCAGCGAGTATCCAGATGGAGAGGGGGACCGGGCTAAGGGG GGGGGGAGAATGGGGGGGGGGGGGGGGGCGAACGACGGCCCTGGAAAAACCACGAAGGTA TCACGGCGGAGTAAAGGAGAGTAAATGACGGGGCGCGAAAGGTAGGTGGGGACACTAACA AGGGGGGAGCGGGACAGAAAAAGCGAGCGCCAGCACGACCACGTCGAGGGGGAACAGGGA CGAGAGGAGGAAGGCATTAAGACGTTCGAAGACGAGACGCCTGAAGAGAGAGCGACAAGC TTTTGGGGGGGGGGGAAAAAAAGAAAACATGCCGCCGGGGGATTAGTCCAGAGAAAGGCG AGCGGGGGACGTAAAGGGAGGAGAGGAAGAGATACCAGAGAAAAGTCGTACGCGTGTGCA GCGGGACAACAAGACAGTAGAGAAAAGCCGGAGAGAGAGCGAGAGGGGAGGGAGAGAGGC CAAGTGAGACATATGGCGGCGCATCTGCGAACCATGCAGCGGGAGGGGGATATGAGGGGC ACAGAAATAGCAGACGACAAGAGCCGACCCGAGACAAAAACAATGAAGAAAAGAACCGAC AGTGAGAAAATGACACCAGGAAGGAAGAGCAGAGGAGATAGCGAACCCGACGGGACGCTG AGCATACAATAGGCGGGCGATCAGAGAGGGATGCGTGTAGAAGGGGCAGCGAAGAAACAT CAGGAAACAAGGGTCGAGTAGGAGAGCAAACGCCAGACATAAGAGCAAAGCGCGGCTAGA GTGGCGCATCACAAAAGGAGAGTGGAAGAAG |
| GenBank Accession | CU458327 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:15385308 - go to primer design |
| BLAST e Value | 1e-17 |
| Hit Clone Code (BAC ID) | MXI10 |
| Hit Gene Code | At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribulose bisphosphate carboxylase (small chain) family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | HE666782 [GenBank] |
Gene hit At3g33009
| Sequence (A. th genome BLAST matches underlined) | >47-K114157-0022-950-G06-8409 TCGGGTTACCATCCTCTGTGCACCGTTCTAAGACGGATCTCTATAGACATTTTGAGTTGA TGTCATTTGTATCATACCCAACCGCGTGGAAGTCATCGGGATCGTCTCACATGCTGATAA TATTTGCATCTTTCAAGACATCCGAGCGGTATACTATGTTTCTGCCATGAGGCTCTGATT TCAACATATGTCCGAGGTACCACCGACATTTGTGACCCATTTGCTTGGCTATCTTCACTA ACCTGCCCGGTCGCTATACCACTTGACGTGAGTTCCCCCATATCGACCCTGATCGGCCGC TATCATTGAGTCGTATTACACTCTCTATGAACTGTTCTCCTGTCTTTACTGCTAGTTCTG TTCGGTCCTCTATTCTAATCTTTGACTCCATGGGAATTGGGGATCCTCTTTCCTGCCCGG CCGCTATTCTTCATAGGTCCTACGTACCACCAACATTTTTGAGC |
| GenBank Accession | HE666781 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:13558190 - go to primer design |
| BLAST e Value | 1e-82 |
| Hit Clone Code (BAC ID) | T15D2 |
| Hit Gene Code | At3g33009 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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