SimpleSearch - Line and FST details
Line specific information
| Line ID | 968G05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N492909) |
| Segregation Analysis | 50:48:47 |
| Confirmed for Hit | F24K9 At4g22880 At5g17890 |
| Parent of DUPLO pair | 12444 |
| Parent of pair(s) | none |
Gene hit F24K9
| Sequence (A. th genome BLAST matches underlined) | >39-K033862-022-968-G05-8409 TATATCACTCAGTAGATGAGGAGGTTAGTAACTGCTGCAAGATTTCTTAGCTGTCAAATT GCTATGGGATCCTCCCTATAGTGAGACCTATTACTCCCCCCCCTTTCCGAA |
| GenBank Accession | CU458631 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:3644276 - go to primer design |
| BLAST e Value | 1e-24 |
| Hit Clone Code (BAC ID) | F24K9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g22880
| Sequence (A. th genome BLAST matches underlined) | >44-K119667-0022-968-G05C-8409 TCATTGAATATATCCATTTACACATTGGGGATACTTTGGAGATTCTTAGTAATGGGAAGT ATAAGAGTATACTTCATCGTGGGTTGGTGAATAAGGAGAAGGTTAGGATTTCTTGGGCTG TGTTTTGTGAACCCCCAAAGGATAAGATTGTTCTTAAGCCGTTGCCGGAGATGGTGAGTG TTGAGTCTCCGGCTAAGTTTCCTCCACGGACTTTTGCTCAACATATTGAGCATAAGTTGT TTGGGAAGGAACAAGAGGAATTGGTATCCGAGAAAAATGATTAAGTTTCTGTGTTTACTC TTATTTTTGAAACTCTATGTGCGAGTTTCTTTTATAATGTGTTTGTGTCTTTCTCATGAA TTTGATGTGTTTGTGCCTTTTATAGTGAATATTGCGGAGCTTAACAAGCAAACTTTAATT TAAAGAAACAAAGTTCTAAAATAAAATATAAAAATAAAACCCAAACAAACTACATGCAAA CCAAACTTTGATTCCCCTGAATTAGTTAACTTTTGTATCTACGAAAGCATTAGTGTGCCT TCTTTCAAAGCAGTCACTGAACTCAACAAATGGTATGGCCAAATTGATTGTGTGCTATTG GTATGGATCAACTTCGGAATCGATTGTTTACTAATGGTATGGCCTTTTTAACCCAATTAT ATATTTGGGCTTAACTCCACTACTTAATGGTATGGCTCAATCTCCTTCTTCTCTCCTGTC TAAACAAGTAAACAACCATCTACCACATCCAACATGATAAATTATATTTTTAGTATAATT ATCCAAATAATAATCTACAGAAAAAACGCAAGTATCAAAATGGTTGAAAATTTGTTAGTA ATTTGGTACTGTACATTGTTCATGTTCTTGAAAATTTGGTTTAATTTGGTATGATTATTG GCTGTATACCTTCCACGTTC |
| GenBank Accession | LN713448 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:12005168 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F7H19 |
| Hit Gene Code | At4g22880 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | leucoanthocyanidin dioxygenase |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g17890
| Sequence (A. th genome BLAST matches underlined) | >39-K033863-022-968-G05-8409 CTTGCTATGGATCCTCCCTATAGTGCTGTCTTATTACTCACTTCCGCTTGACTCTTGTAC ATTCTGTTTTCCCATCCTTATCATAGATCCCTCTTTACATTTCCGACTTATTATGAATGT ATCACACGCCTTGCTACTATGAGCTCCGTCATCCGAATTGCTATGTCTGCGAAAAAAAGG TAAGTATATTCTCATGAGTTGGGCTTTTGGACTACGAACCTCCAAAGAACTTGGTCGTAG TGTATGTAAAATGAAATACCACAATATATCTTTCACCATCCTCCGTCTGCTCAACCTTTT TAGAAGAAATACCATCGATCCAAAATTTAAGACTAAATTAATTCGAAATAATCAAGCCAA CCTCTCGGAGAACCTGCCCCTGAAGGGATGAGAAGCCACAACAAAAACTACCCTAGAAGA CAACAAAAGAGAAATCGTGAAACGTACACACAGGTGTGATAGAAGTAGTTGGTGAGGGTC AAAATAAGCAATATACGACCAGCGGGGAGGGATACAAAGTATACCAGCAACCAAGTCACC CCGAATAACGTCACAATCAAGGAATAACAACAAAGAATAAACAAACAATAAACCCCATAA CAAAACCGAAAAACCCAAGCCCGAAAAAAGGTAAAATAGCTCTGGAACATAGACAACAAT AACCGAGAAAAAGATAAGTGATTCGCGGTTGCCCAAGGACACCCCCTTTTCATCTTTCAC AATTGGTCTGGAAACTTACGCCAAATAATAACCCCTTCATCTACCATAAACAGACCGAAC ATTTTTGAGCCTAACCCACTTCAATTGTCAACCCCCACTCAGACAAAAAAAAATCCCATA TCAGGCGGGAGTGGAGTCCGTACTCCACTCCCGAAATTGTAGGACTACTCCTCCCCAGGA GTACAGGCGAGGCAAGCAGAACAGGGGCTTATGAGGGCGTCGCGTACACGCAGACACTAA AGTAGACGATAGATCCAAAAAGAAAGTCAACACAGACCAGAACAGACAGTAGAGAACACA CTACTAATGGAAAGAGAAAAAAGAAAGCAGAGGAA |
| GenBank Accession | CU458632 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:5921523 - go to primer design |
| BLAST e Value | 1e-32 |
| Hit Clone Code (BAC ID) | MPI7 |
| Hit Gene Code | At5g17890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DA1-related protein 4 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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