GABI DUPLOdb - pair details


Details for pair 2333
  
  Pair Info Parent 1 Parent 2
Pair ID 2333    
Parent loci   At1g01720 [Araport] [TAIR] At1g77450 [Araport] [TAIR]
Gene Annotations   NAC (No Apical Meristem) domain transcriptional regulator superfamily protein NAC domain containing protein 32;
Pair-related paper(s)  
Similarity (TAIRv10) 64 %    
Gap (TAIRv10) 21.1 %    
Component 3    
Genetically unlinked Yes    
Assigned allele   239B09 / At1g01720 852A11 / At1g77450
Insertion classification   CDSi CDSi
Parent line's graphic view   Graphic view of gene At1g01720 Graphic view of gene At1g77450
Parent line's confirm. status   confirmed, show confirmation seq's confirmed, show confirmation seq's
Primer and wt-amplicons   show primer details show primer details
Doublemutant ID 2333/1b2.10.3
NASC set ID N2102858
Assigned allele   239B09 852A11
Allele genotype in parent1   Het  
Allele genotype in parent2     Hom
Allele genotype in DM1   Hom Hom
Comment(s) and/or quirks Not a true DUPLO pair because the two ORFs display an aa-sequence similarity below our threshold, or at least one of the two genes has no annotated ORF (e.g. transposable elements or pseudogenes).

 

Last Updated on Thursday, 06 December 2018 16:11