SimpleSearch - Line and FST details
Line specific information
| Line ID | 040A12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N403756) |
| Segregation Analysis | 50:43:35 |
| Confirmed for Hit | At1g09070 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g52720
| Sequence (A. th genome BLAST matches underlined) | >84-K114716-0022-040-A12C-8474 TGCGGACATGTACATTTTCACTTTCAATGGCTTTGATTATCACTTGCTCCGCTCTACCCA CGATCCGAGCATCTTCCGGATCCGGATCCCTTAACCCGGATCAAAACCGTCAGAAATCCG CTGCATGGTGGGCTCCTCTCTTCGGTTTACCCTTCGATCCAGATTACCTCAACATCGAAA GCTCATGGTCCACCGCGATTCCGTATAAAACCGATATTTCCGGGTCGGGTCAAAAGTTTT GTCGCGGTTGTTTTACGGATGAGAAAGCTAAGCAGTTGAGGAGGAAAACTGCAGAAGCTT CCACGTTCCATGACGTAAATGTATCACTCCGCCATTGCTTCTCGACATGTGTTTGATATC ACCGGCCGACTTGAGGATTGAAACGCATTCGGGTCACCTCGGAGACGAATCA |
| GenBank Accession | LN713381 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:19640991 - go to primer design |
| BLAST e Value | 1e-177 |
| Hit Clone Code (BAC ID) | F14G24 |
| Hit Gene Code | At1g52720 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hypothetical protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | failed |
Gene hit At1g09070
| Sequence (A. th genome BLAST matches underlined) | >25-K032734-022-040-A12C-3144 TCCACATCCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGACA GGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGTGTTTAAAC AAGATTTCATGGTTGACAGGATATATTCAATTGTAAATGGCTTCTGCTAGGACGAAGCAG AAGACAAAGGTTGATAAAGATTGCGGCACCAAACCTAAATGGAAGCATCAAATGAAGCTC ACCGTCGATGACGCAGCGGCGCGTGACAATCGTCTTACTCTTGTTTTCGAGATCGTGGCG GATCGTCCCATCGCTGGTGATAAACCTGTCGGTGAGGTTAGCGTTCCGGTGAAGGAGCTT TTGGATCAGAATAAAGGTGACGAGGAGAAAACGGTTACTTACGCCGTGAGGTTGCCTAAC GGGAAGGCGAAAGGATCTCTCAAATTCTCGTTCAAATTTGGGAAAAAAGTAT |
| GenBank Accession | HG968631 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:2927875 - go to primer design |
| BLAST e Value | 6e-168 |
| Hit Clone Code (BAC ID) | F7G19 |
| Hit Gene Code | At1g09070 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | soybean gene regulated by cold-2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |