SimpleSearch - Line and FST details
Line specific information
| Line ID | 052H10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N404990) |
| Segregation Analysis | 50:50:36 |
| Confirmed for Hit | T24P13 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g06147
| Sequence (A. th genome BLAST matches underlined) | >80-K012473-022-052-H10-8409 NTGATCCATGGTAGATTTCCCGGGACATGAAGCCTTTACACTTGACAATGTTTTACATTG TGAATGGATCCGGGAATGTTCAGTGACGGGTACGTTTTCATTGTCCGTCGTGCCCACCAA CATTTATCGATATTAATTCACAAACAGAAACCGATCTTAACATCTATGGGACCCTTCCTA CCGGGAAAAAACGCCGCATCCACCTTACCCTTGTCGAAACCCGACATGGCGCCGGTATCC AGCTCTATGGGATCCTCCCTATAGTGANNNGANANGCGAAAGCTCACGAAGATTTCCAAA TCACCGCACGATCTACAATTGACGAATAACAAAGCTTAGGGAACTGCAACACACGGTGCG GAATAGTGGATAATGCCTCTCCATCCGGGCCAACCACCCAACATCCAGGGGCATCTGGGC GGTCCCCTCAGAGAGAGCCGCATCACTATGGAAAGATAATGTGGCCGCATAAGAAGAAGA TTTTCCCGTGGCGCATACCACCGTTGCTCTATGGAACCCTGCCTATACTCCCTGCCGTTA AGGCGGAGACACCCTATGAGGGCCGCGCCCCCCCTCCAGGGGATTGGGGCCTCTCAACAT AACCCCTTACCACTGTCGGCAACACACAAAACCCCGAATTAACATCTGCGCCTATGGATA CCCACCATAAGCACGGCCTCGACCTCCAGTCTATTTCTTATTCGAGTGTTATCCGACTAC CGAAGACTCAAGTCCGTAATAATTAATATATAATNAGATAATAATAAATAGNGAACATGT ACACAAATACTGAAATA |
| GenBank Accession | FR801591 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:9938951 - go to primer design |
| BLAST e Value | 7e-12 |
| Hit Clone Code (BAC ID) | F3H9 |
| Hit Gene Code | At1g06147 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | long noncoding RNA |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit T24P13
| Sequence (A. th genome BLAST matches underlined) | >80-K012299-022-052-H10-35St TGACGTAAGGGATGACGCACAATCCACTATCCTTCGAAGACCCTTCCTCTATATAAGGAA GTTCATTTCATTTGGAGAGGACAGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCG GTTAATACTTTAAGGGTATTATGTATTTAATGAAAATGTTCATCGACACCTAACATGATT TCTTGCTTCAATCGGCGAATGTTCTTGTGCACATACGTTTTGACCACAAGGAATCAATTC TTCACCAATTCATGGAAAGCATAAAGATCGCGGCCAATACTACAGCTAATGTGTTCGTAA GAATATTTCTCATTGTCTTCGAGAGTTCAAAGTAATTAGGTGTTTGTATATAAGATAGAC CTAGAGATAAATATAGCAGTCTCCCATTTCTGTTCTGATTGATAACTCTTTATTGTTGCG ATAAATGGAGTACCACCAAGTATCTTACTAATCAACACTACCAAAAATATAAATTGCAAT GTGATTAGTAGTTTTTGGTATGCACATGAGTTGATTGATACAAGGCATATATATATATAT ATATGACATACTACGGCTAATGACCAAGAACATGCAAAAGAAATGTCTGAGATATCTAAT AACACTTAACTCACATAAGAGTAAATACACATATACCCGATAATATTAATGCCCTATGGG ACCCTCCCTATAGAGAGTC |
| GenBank Accession | AL753921 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:9277189 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T24P13 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL753921 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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