SimpleSearch - Line and FST details
Line specific information
| Line ID | 179G11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N417171) |
| Segregation Analysis | 100:93:71 |
| Confirmed for Hit | At5g61840 |
| Parent of DUPLO pair | 2351 |
| Parent of pair(s) | none |
Gene hit At1g22990
| Sequence (A. th genome BLAST matches underlined) | >87-K013563-022-179-G11-8409 NTGATCCATGATAGATTTCCCGGACATGAAGCACTTTACAATTGAAGACTAGATAATCGC TTGCCCTAGCTAGTACAAAGCGCGAGTAGGCTGTAATTGACTACGTGGAACTTGAGAGTT GAAGATCGAACCTTTGATGGAGGAAACAGCGTTCTTGATTTTGCGTTCGCATCCGTCACA GTCGATCTTCACCTTAATATTCACCGTCTGTTTATTAGCAAAATTTTGAAAAGGTTAAGC AACTAAGAAACGACGAAACAACAACTAAACGGCTGCGTTTAGAGATTTTAGTTACCTGCA TGACTTTACGTTTCTTCCGTTTTCGTATTGAGACGTAGAAATGGTTAGAGAAATACTCAG AAAGATAATTGAGAGCTCCCATGTTTACTGTCACAAGCGAGCAGAGAGATGGAGAGGGAG AGGGAGAGGGAGAGAGCTATGGGATC |
| GenBank Accession | CT026157 [GenBank] |
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| Predicted Position of Insertion | Chr1:8139543 - go to primer design |
| BLAST e Value | 2e-172 |
| Hit Clone Code (BAC ID) | F19G10 |
| Hit Gene Code | At1g22990 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Heavy metal transport/detoxification superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 066F04 |
Gene hit At2g36500
| Sequence (A. th genome BLAST matches underlined) | >87-K104551-0022-179-G11-8409 ACACATTATTCCGGTTCGGAAACCTTAATTTCGACGTGTCTACATTTACCTCCAAATGGG AGGGAACCACTGTCTTTGATGCGATGTCCAAGGATGGCTACTGTTGGATTCCTCCCTATA GGAAGTAGCAATTCCTGCAGGAGCGACAGTAAATCAGGGGGTATGATATCTGATGTCCCC GCCCGATTTCTTAGAAGCTAATATGGGTGTTGATATAATATCTATGTTTATACCTCCGAC CATTTATCTTTTTATATAGCAAATTTATGTTAGTATGACTAATCGGTAAGTGTTTGATAA TTGAGGACGCGAAGGTATTACCGATGTATTTACTGTCTATAGTTACTCTATAAATATTTG TGTCCCAACTGCCATATTTTTAGATAGTGTAATCTAGCGGAGTGGTATTTTATGAATGCG TTTGTATGGTATTGTAATTTCTGTTTAGTCTTCACATATTTGTGTTAGATATTAATGTAA AGTTATGTTTTGCGATTATGAAAAAGTGATAAATTTTGCGCAATAGGCTGTGTATTCTGA CGGATGGATAATAATTAGTTGTTGTTCCATTTATTTGGTCCTACGACTTTTGTTTTCATT ATTATTTATCTTTTTATACTTATCTCTATCTGCCGAGGAATATATGTTAGTCACGTATAA TATAGCATGGACTGTAATCAATGTGTTTTGTTGATTTCTATTATAGAAGTATATTGTTAT ATCGTATGTGTCTTCGATAATATAGACATAGTTTCTTTTAATG |
| GenBank Accession | FR805231 [GenBank] |
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| Predicted Position of Insertion | Chr2:15318526 - go to primer design |
| BLAST e Value | 6e-04 |
| Hit Clone Code (BAC ID) | F1O11 |
| Hit Gene Code | At2g36500 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | CBS / octicosapeptide/Phox/Bemp1 (PB1) domains-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 179G12 |
Gene hit At3g51260
| Sequence (A. th genome BLAST matches underlined) | >72-K020161-022-179-G11t-8409 CTGTATTCTCCCCCGATGGTTCACCATCTTCCAAGTAGAGATAGTGCCCTATGGGCATCC TCCCTATAGTGAGATGCGAGGTAATTTTTTTCTTATGAAAGTTCCTATGGGATCCTCCCT ATAGAGAGANTCCCCTACCTCCACGATTCCATGTATTGTTCCTATCTCTACCGATACGGA ATGCTTACTCCGGATTTGATCCTTTTTCTTATGGTTCTGCACTCCGATTTTGGTTCTAAT CTTCACCTGTATAGCTCGCTTGATTTACTCAATCGCTACTTGTATAATCACTGTTTCAAT CCTTCTGAACTACATCCTGATGTTGGAATTTTCTATCACTTCCCAATTGCAAACCTATGG GATCCTCCCAATACTGAGTTCTGCCTATGCCCACTAGGATATCCCCCCTATAGTGAGAAA CGGGTGGAGACANTGATATTCTGTTGCATCCC |
| GenBank Accession | BX530807 [GenBank] |
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| Predicted Position of Insertion | Chr3:19031107 - go to primer design |
| BLAST e Value | 4e-52 |
| Hit Clone Code (BAC ID) | F24M12 |
| Hit Gene Code | At3g51260 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | 20S proteasome alpha subunit PAD1 |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 135D07 |
Gene hit At5g61840
| Sequence (A. th genome BLAST matches underlined) | >87-K013565-022-179-G11-8409 NTGATCCATGATGATCTTCCCGGACATGAAGCACTTTAAAAAGAAGACGGGATATCAACA TGTCCGGTAATGGACCGAGGCGCAAGAATTGCTGCAATGGTGTTATATAAAAACTATGGG ATGCTCCGTATAGAGATTCCTATGGGATCCTCCCTATAGTGAGTTTGNTCATAATAAAAA ACATAAATGTCCTAAAACATATAATAAGTGCTTGATCGGTTTGGAATTTAGGACATAAAA CTCAAAAAAGGAAAATTTATCAGACTGTTTTTAGAGCCATGGATTGTTCTTATAATCAGT GATGATGTTTGTTTGTCAAACTGGCACAGGGGTGCAAGAGCAGCTGTATGGGAAAACTTC AAAGACAATCCGCTGTTTGACATCTCAACAGAGCACCCAACAACATATTATGAGGACATG CAGAGAGCAATCTTATGCCTATGCCCACTTGGATGGGCCCCATGGAGTCCAAGACTGGTG GAAGCAGTGATATTCGGTTGCATCCCTGTGATCATAGCAGAAGACATCGTGTTACCTTTT GCAGATGCAATCCCCTTGGGAAGATATTGGTGTGTTTGTGGATGAAAAAGATGTTCCTTA CCTGGACAAATTATTACATTTATCCCACCAAGAGGTATATTGAAAAAACAGAGGTTGTTG GCAAACCTGTTGATGAAAATAGGCCTTGCTGTTTCCGCAACCGGTTTAACCAGGGGATGC GTTTCATTAAGTTTGGAAGGGGCTGGCTTAATAACTGGCTTAATAAAAGAAGGTTTTCCG AAATACTGTGAAAAATTTTTTGACCTGGATGGTAGAACCGGCCCTCGCTTTTAAAATTGG TACGGCCACGGCTTGAAATTCATATATAAACTATTGTTCCGCTGGCTCTTCCCCTCCGGG GTGGTTTTTGAAAAAAATAAATTTCTCTTTTATGTAAAAAGGAAAAACTCTTTCCTTTTA TTT |
| GenBank Accession | AL771398 [GenBank] |
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| Predicted Position of Insertion | Chr5:24840149 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MAC9 |
| Hit Gene Code | At5g61840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Exostosin family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |