SimpleSearch - Line and FST details
Line specific information
| Line ID | 001C07 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400031) |
| Segregation Analysis | 50:7:7 |
| Confirmed for Hit | At5g18610 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit F6B6
| Sequence (A. th genome BLAST matches underlined) | >51-K026783-022-001-C07-8409 NNTTTTGGCGGTATCCGGAATGAAGCCTTTACATTGAATATATCCTAGCTCCTTCTTTTG GAGCACTTAGCTCCTTCCTCGGTTCAGGACCTCGTCGAGACTTTGATTTATCTACCGAAA TAAAATAAAATGTTAGTATGGGATCCTCCCTATACTGAGCCGTATTACGAGCGACGGTGC AACGGAGTGATCCACATGGGACTTTTAAACATCCTCCGTCGGATGGCGTTGCGAGAGAAG CAGTCGATCCGTGAGATCAACCGACGCACCGGGCAGGCGCGCAACACGATCGCAAAGTAT TTGAACGCAGGTATGGGATCCTCCCTATAGTGAGACATATTGAACATGTTGTTCATTCGG TTTCATAAGGAGATAATCTTGTCTCCAAAAGACAAATGAAGAGATCACAATTTATAGAAA ACGAATAACGAGTTACACCGGAAAATAGTTTATCAATCACGATCACATCCGTTTCAAACA AATAAATCCACCAATTCTTTAAAAATTCATAAAGGCATGAATGCTTGA |
| GenBank Accession | CR394623 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:17651935 - go to primer design |
| BLAST e Value | 2e-72 |
| Hit Clone Code (BAC ID) | F6B6 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At5g23890
| Sequence (A. th genome BLAST matches underlined) | >51-K025787-022-001-C07-8409 CCCTATAGCGGAGCGGCGTATACGGATCATCAGCTCAATCTAAAGATTATGTGCAGTATG GGATCCTCCCTATAGTGAGCCGNTCCAAAGTTACATTTAAATTACAAGAATAATAAAAAA TAATCATACGAACGCAGGGGAGCATGAGATCCTCCCTATCCTGCAACCTAGTACCTCCAA GTTAACACAAGTCCTCCTATACATCCTACACAACAACGAGATTCTAGTGTCGTCTTCCAG ACCCTAGCTTCTTTTTGCCCGAGCGGGCTATTCACTCAAACGTTCACTTTATCCGTCCCG CGAGATTTACCGCCTCGCATCCCTACCTCCAAACGGTTACTACGCTAGCCAAATCCTCCG TCATCACATTCCATTGAAGCAAATCTA |
| GenBank Accession | CR394622 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:8059446 - go to primer design |
| BLAST e Value | 1e-09 |
| Hit Clone Code (BAC ID) | MRO11 |
| Hit Gene Code | At5g23890 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | GPI-anchored adhesin-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g18610
| Sequence (A. th genome BLAST matches underlined) | >51-K026818-022-001-C07-8409 AGCCATTTACATTGAATAATCATACTCCTTCTTTTGGAGCAGTTAGCTCCTTCTTCTGTT CAGGACCTCGTCGAGACTTTGATTTATCTACCGAAATAAAATAAAATGTTAGTATGGGAT CCTCCCTATAGTGAGTCGTATTACTCGCGGCGTTGGGGGGTCTCGTTTAAGGGGGGGGTT GTGGACCTCTGCGGTTGGGTGGTGGGGGGAGAGAAGTTTTCTTTCCTTGTTTTTTTTCGA GGTGTTGGGGATGTGCGTATCTTTTCGTTTTGTATGTGAACGCAGGTATGGGATCCTCCC TATGTTGAGTCGTG |
| GenBank Accession | CR394624 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:6193499 - go to primer design |
| BLAST e Value | 1e-42 |
| Hit Clone Code (BAC ID) | T28N17 |
| Hit Gene Code | At5g18610 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Protein kinase superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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