SimpleSearch - Line and FST details
Line specific information
| Line ID | 002A11 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400107) |
| Segregation Analysis | 80:7:5 |
| Confirmed for Hit | At3g49680 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4884, 4959, 93991, 93994 |
| Note |
Gene hit F15A18
| Sequence (A. th genome BLAST matches underlined) | >81-K027038-022-002-A11-8409 TTGTTGATGAATCTCGAAGAAGCCATTTACAATTGCACATACTATTGTGAATAAATGCCG ACCATGGGATAGCGAATGCGCACATACAGCACATGAGTAATCTGCACTATCCAGCCTGTA TGGGATCCTCCCTATAGTGAGTCGTGTTACTCACTTTCATTTTATAATAACGCTGCGGAC ATGTATGGGATCCTCCCTATAGTGAGACCTATTGATACTTCCTCTTTCGTTTTCTCGATA TTGATCCTCTTTCTCTTTCCCGATTCTTGATGATTTACCCGAAATATGATTCTTTAAATT GGAAGACATAGGGAGCGTACGATACGATGAGCGAGGGAAGGGGTAATAAAAATGATTTAA TAT |
| GenBank Accession | CR394703 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:9722025 - go to primer design |
| BLAST e Value | 4e-12 |
| Hit Clone Code (BAC ID) | F15A18 |
| Insertion Classification | Genome Hit |
| Confirmation Status | failed |
Gene hit At3g49680
| Sequence (A. th genome BLAST matches underlined) | >81-K026819-022-002-A11-8409 GAAGCCATTTACAATTGAATATATCTCTGCCCATGGGCAGAGCCCCTAACTAATCAGCTC TCTTTGTTATGCTCGCTTTCATTAAGGTCAGGAAGACTCCCTAGTATGATATTACCAACT TTCTTTCTGATGGCATTTACCCCGTCAAACAATCCCTATAAAAACATACACTACTAAGAC TCATGTGATCCTAGATTGCACTCTTTACCACAACACATTGCTTGGCATTTCTCATCATCA CTTACAATATAAGAAGATTTCTCCGTGCAATATATGAATATACATTCAGTAAATAAATCC TCACTAGATGCAACTAACATAACAACTAGGAGACTAGACTTATTGACAAACTCAGGCTGT GATACATTGTCCAGAATTTGACAAATTTCTCCACACTTTCAAACCCTCCTAACTCCCTTA AAGATTCTTGATTAGCATAAATTAAGTTTCTTTCATAGAATTCATTACAGTAAAGGACAG GACTTTGAGAAGCTAGAAAACAAAATCG |
| GenBank Accession | CR394701 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:18424083 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T9C5 |
| Hit Gene Code | At3g49680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | branched-chain aminotransferase 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |