SimpleSearch - Line and FST details
Line specific information
| Line ID | 002D03 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N2000002) |
| Segregation Analysis | 50:1:1 |
| Confirmed for Hit | At5g51400 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6793 |
Gene hit At1g62020
| Sequence (A. th genome BLAST matches underlined) | >20-K025789-022-002-D03-8409 CATGTTACAATTGAATATATCCCGTCGCGAGAGTGAGCATGTAATAGGCCCCTCCCTATG GTGACTTGCTAGATGAATAGAGATCTACATACCTCTGGTGTGTTACGCTCACCAGCACGG GATCCTCGATATATTGCGCATTTCGAAATCAATAAAGACATGCTCTATTAACAGAATAAG AGTGTTGAACTTTTGGTGATTGGGGGAGGGGATATGTAAACCTCCCCATATTTAGACCTT CTAACAAAATGCACTTACTTTATATTATACCGCTAAATAAATTTTTTTGTAGTATCTAAT AGAACGATCATATAGTCAACACAATCATGACTCACCCATAGTCACACAATTCTTAAACTA CAACTTAGAGACCGAGGTGATCAGATTTTTACTAACGTCACATTCTTTAAGACCATAAAA GAAGTGGGAATAAACAATTCACAATAATTCAACGCTAATAAAATCATATCCAATCATACA CAAATACAATAAT |
| GenBank Accession | CR394736 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:22923630 - go to primer design |
| BLAST e Value | 3e-16 |
| Hit Clone Code (BAC ID) | F8K4 |
| Hit Gene Code | At1g62020 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Coatomer, alpha subunit |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g51400
| Sequence (A. th genome BLAST matches underlined) | >20-K027008-022-002-D03-8409 TTTACATTGAATATCTCCGTCCGACATCTGAAATCCAAAATTAGATCAGCCAAAATTGAA TTGAAAAATGGAGAAAAAGAGAGAAAAAGAGATCTTTACGAACCATATGAAGGATTGGAG AAACCGAAGAGTGTCCTCAAAGGTTCGTCGTCTTCACTATTTTTTTTTTTTTGGGTTTTA GGATTTTGAAATTTTTGGAGGGGTTTTTTTGGGGTTTTAAAAAAATTTGTTATTTAAAGG ATTTTAAAATTATTTTGGTTTTTTTTTTTTGGGTTGATTAATTAAATTTTTTATTTAAGT TAGGTTTTTTGTAAAAGAATGATTTTTATTGGAAAAAAAATTTTNAAAATTTAAATTTGG TGGATTTTTTTAAATTGGTTTTGAAATTGGAAATTTTTAGGGGGATTTATTTGGGTTGGG AAAAAATTTAAATTTTTTTTTAANTTGGGGTGTTTATGGGAGATTTTAAAATTTTG |
| GenBank Accession | CR394739 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:20879962 - go to primer design |
| BLAST e Value | 5e-30 |
| Hit Clone Code (BAC ID) | MFG13 |
| Hit Gene Code | At5g51400 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | PLAC8 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR394737 [GenBank] AL751376 [GenBank] CR394738 [GenBank] CR394739 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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