SimpleSearch - Line and FST details


Line specific information

 
Line ID 003D03
Vector Used pAC106
Line Availability available as T3 set from NASC (N400231)
Segregation Analysis 60:37:11
Confirmed for Hit At5g19560
Parent of DUPLO pair none
Parent of pair(s) 4100, 4166, 4211, 9019, 97462
Note

Gene hit At3g18220

 
Sequence (A. th genome BLAST matches underlined) 
>20-K025791-022-003-D03-8409
CTGATATTTTAACCCCAAGGCGGCACACGACCATCTGATCCCCGGGTATGGAATCCTCCC
TAAAGTGAGAACTTGTCTTTTTAATGCTTTAAAACAACTTACATGAACTTTCACCACTAA
GGAAACTCTTGTAACCTTCTTTGATTATCTTTTTAACTCCATGACACACAACATCCTTAG
TATCCGGATGAAATTTCTGCATTTCTTTCCGATTTGCACAAAATAAGAAACAATTCCCTC
ATGATAAACCGGGAAATTAACGTATAAGTGAGATGGATCCATAGAAATGTATGGGATCCT
CCCTATAGTGAG
GenBank Accession CR394886 [GenBank]
Graphic View Graphic view of gene At3g18220
Predicted Position of Insertion Chr3:6249309 - go to primer design
BLAST e Value 5e-110
Hit Clone Code (BAC ID) MIE15
Hit Gene Code At3g18220 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Phosphatidic acid phosphatase (PAP2) family protein
Insertion Classification CDSi
Confirmation Status failed

Gene hit At5g19560

 
Sequence (A. th genome BLAST matches underlined) 
>24-K032733-022-003-D03C-3144
TCCACTATCCTTCGCAGACCCTTCCTCTATATAAGGAAGTTCATTTCATTTGGAGAGGAC
AGGGTACCCGGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAGATTGGCGA
TTTTGGAGAGCTATTCAAGGGTACTAGAGAGTCTTGCTTCAAAGATAATGTCAAGAATAG
AGGATGTTCTTGAAGCCGATCGGCTAGTTCAAAGACAGTTGATGGGAGAGGCAGAGACAA
GATCAGAAAGCGAGGCAGAATCAGAATACGAGGAAACTGAAAAGGTGGTTGCAGCGGAAA
CACCAAACTCGAGGAAACTATCAGACTTCATAGGGTGGAGATTGTCATCTGATACTAAGA
AGCATAGTTCAATGAGTGATATAGAATTCTTCCACAAAGTTGAGCAGGAGAAGGAGAAGC
CCATGATGAAGTCTCCAAGAGCTCTACCGAAGAAATTTTCATATCTAGCAAAGTTAGAGA
ACATGAGAAGCCCTAGTGACAGACACTGATAGTGAAAAGAGAAGGTAATAGAACAGGGCA
TAGAAAAGAAAAA
GenBank Accession HG968542 [GenBank]
Graphic View Graphic view of gene At5g19560
Predicted Position of Insertion Chr5:6605737 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T20D1
Hit Gene Code At5g19560 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ROP uanine nucleotide exchange factor 10
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR394887 [GenBank] FR799813 [GenBank]


Last Updated on 10.06.2021 13:37