SimpleSearch - Line and FST details
Line specific information
| Line ID | 004D12 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400336) |
| Segregation Analysis | 50:43:35 |
| Confirmed for Hit | At4g24050 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 94759, 94771, 94772, 94773, 94774, 94775 |
| Note | |
Gene hit At3g11220
| Sequence (A. th genome BLAST matches underlined) | >92-K014807-022-004-D12-8409 CTGATCCATGTAGATTTCCCCGGACATGAAGCCTTTACAGAAGAAATTTGCTCGTAGGCA GACTCAGTGGCATACATCACTNACAGCAGAAGAGTTATGGGAACCTTACTTATGGGAGCT AGAGAATTATTACAGAACTTCTCCGCTATGGGATCCTCCCTATAGTGAGGGAACAGGNGC CTGCTNTTCTTGAGGCAAAAACCTTCTCAATGAGCTTGAAGAAGAGAAGATTCTTGGCTC TATGGGATCCTCC |
| GenBank Accession | AL751479 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:3514109 - go to primer design |
| BLAST e Value | 5e-25 |
| Hit Clone Code (BAC ID) | F11B9 |
| Hit Gene Code | At3g11220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Paxneb protein-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit F14J22
| Sequence (A. th genome BLAST matches underlined) | >004D12-LB-1-18387892-R-150-a TTTTTTTTCCATTTTCAGATTTGCCATATGTGAGACACTATAAAAGTAACTCTCAACTCA AGCAACAATTTGGTTTAATCGATTTTTTATTGTGGTTTGATGGTTTTTGATCAATCCACT CAGACTTTGGTTAATCTTCTTCTCAAAGTA |
| GenBank Accession | KG779995 [GenBank] |
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| Predicted Position of Insertion | Chr1:18387892 - go to primer design |
| BLAST e Value | 3e-80 |
| Hit Clone Code (BAC ID) | F14J22 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At4g24050
| Sequence (A. th genome BLAST matches underlined) | >15-K114962-0022-004-D12C-8409 CATTTCATTGAATATATCCTGGCTTCTTCCTGGCTTCCAGCTCGTTAAGACCGTCCCTCA AGTAAATAATTGTTATTTTCGTTAGTTATAAAGTTTGTAACATAATCTGTGGTGGATAAG TTATTCTTTTTGTTTTTAATCCTGTTTAAGATTATTGGATTTATGTGCTACTTTTTTTTT GTTTTGGCATGGGATTAGGCAGCAGCAACGACGTGTTACGTGGCAACAAATCCAAGACTG GTGAACGTATCGGGAAAGTATTTTACGGATTGTAATGAAACGACACCGTCTGGACTCGGA ACCAACTCCGCGAAGCTACCAAATTATGGGCTGCTTCTGAAGATCTGGTTACTCAACATT CCAGACCAGTTTCGACCCAGGTAGCTAAAAAGAA |
| GenBank Accession | HE664175 [GenBank] |
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| Predicted Position of Insertion | Chr4:12499293 - go to primer design |
| BLAST e Value | 5e-171 |
| Hit Clone Code (BAC ID) | T19F6 |
| Hit Gene Code | At4g24050 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NAD(P)-binding Rossmann-fold superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g60770
| Sequence (A. th genome BLAST matches underlined) | >92-K014797-022-004-D12-8409 TGATCCATGTAGATTTCCCGGACATGAAGCACTTTACAAGAGAATACCGTGGCTTCGCTC TTTTCACTCTCCCTGAAAAAAGTCGTTCATCCTCGTATACGATCGTGATCGGGACTGCTT CAGAGTTTTGCCACTGAGTCTTTCTGTATTGTGAAAAGGCAATGGGCGACTCAGATTTTA TGCAACATCCATTGAAGGTAGCTTGTTATAAGAACAGACTCGTCCCTCTGGGATCCTACC ATANNNGACAAAAACTCTAGAACTCCTACGACCATGGAACCCCCCTACAGCGGGACNNNC GCAGGCATACTCTGTGGCTTTTGTAAGCATCAGATCGGCTAATACCTTGGAACTGAAGGA ACCCTATAGAAGCATAGTCATTGATGATCCTTCACC |
| GenBank Accession | FR799852 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:22460355 - go to primer design |
| BLAST e Value | 2e-21 |
| Hit Clone Code (BAC ID) | T4C21 |
| Hit Gene Code | At3g60770 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribosomal protein S13/S15 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | failed, line belongs to a contamination group, please check line 004D11 |
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Last Updated on 10.06.2021 13:37 |
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