SimpleSearch - Line and FST details


Line specific information

 
Line ID 004E10
Vector Used pAC106
Line Availability available as T3 set from NASC (N400346)
Segregation Analysis 50:38:30
Confirmed for Hit At1g61500
Parent of DUPLO pair none
Parent of pair(s) 10580, 10587, 10588, 10590, 10591, 11411, 11415, 94805, 94814, 94823, 94836, 94837
Note

Gene hit At1g61500

 
Sequence (A. th genome BLAST matches underlined) 
>77-K014807-022-004-E10-8409
TGATCCATGTAGGATCTCGGTGAATAACTCTGAGGCGTGAGTCATGGTGGAGATAGAGAA
GTCCACGTGCAATACCTTGAATGATATCAAATCTTTTTGGCCAATCAATCTCCAGCCTTT
TTCTTGAATCTAAGAAATAAAACTGTCAGACAAACAGTTTCCACATATATATAAAAAGTT
ACTGAATAGTAAAGGAAGGATGCAAGAAGGGACCAACCAAAGAGAAAGGTATCAAGGCTT
TTGTTCACCATAAACTCATAAATCAATAGCTTCTCTTCTTCTTCGATGCAACATCCCAAA
ACCCTGACTAAGTTTCTGTGTTGGAGTTTTGAGATGAGTACTATTTCATTCATAAACTCC
TCTTTTCCCTGTCCAGAGCTGCTATGGGATC
GenBank Accession AL751495 [GenBank]
Graphic View Graphic view of gene At1g61500
Predicted Position of Insertion Chr1:22690514 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T1F9
Hit Gene Code At1g61500 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation S-locus lectin protein kinase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g60770

 
Sequence (A. th genome BLAST matches underlined) 
>77-K014797-022-004-E10-8409
NTGATCCATTGTAGATTTCCCGGACATGAANGCCTTTACAATTGAATACNGTGGCACTGC
TTATAAACCAAAAACTGTAACATTTTGTTCATCGCTCTATTTGATCTATGATCGACCACT
GCTTACAAAGTATCTGAGCTATGTGCTCTTTCTGATTTCAGAAAATCGTATGGGTGACAT
CGTTCTATATACAACTCATTTTGACGTTTTTTTGTTTTTCCAATCAAACCCATCCACCTC
ATTTTTAAAAAAACTCCAATTAGACAGTAAAACTCCTACCCCCATGGAACCCCCCCCCTG
AGGGGACAAGCGCAGGCATTCTTGTGGTTTTTGTAATCATCAGATTGGCTAATACCTTGG
AAATGAAGGAATCCTATAGAAGTATAGTTCTTGATGATCCTTCACCTATGGGATCCTCC
GenBank Accession AL751494 [GenBank]
Graphic View Graphic view of gene At3g60770
Predicted Position of Insertion Chr3:22460366 - go to primer design
BLAST e Value 3e-51
Hit Clone Code (BAC ID) T4C21
Hit Gene Code At3g60770 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal protein S13/S15
Insertion Classification TS2TE (3')
Confirmation Status failed, line belongs to a contamination group, please check line 004D11


Last Updated on 10.06.2021 13:37