SimpleSearch - Line and FST details


Line specific information

 
Line ID 005H06
Vector Used pAC106
Line Availability available as T3 set from NASC (N400474)
Segregation Analysis 50:48:43
Confirmed for Hit At1g65486
Parent of DUPLO pair none
Parent of pair(s) 97312, 97313

Gene hit At1g65486

 
Sequence (A. th genome BLAST matches underlined) 
>48-K014768-022-005-H06-8409
CTGATCCATGTAGAATTTCCCGGACATTGAAGCCTTTACAATTGAATATGATTCCACAAC
TTCAACTTGAGAGGAAATAGTGAAAAGTACAAGAAGCATTGGTAACACAAATGCAGCGAT
ATTTGGTGACATCAAACCCATTTTTTTCTTCGTCATGTTTTTGGTCATCGGAATTGGCAA
GTGCTATGGGATCCTCCCTATAAGTGAGANNNNTNNNNNNGNTNNNGCTATTNANNTTTA
TTTGCAAATTTTGACTAAGGAACGCGGTTTATACATCAGCTACAAGCTTATAAGATTAGA
TAAACGAATGGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession AL751621 [GenBank]
Graphic View Graphic view of gene At1g65486
Predicted Position of Insertion Chr1:24349614 - go to primer design
BLAST e Value 5e-59
Hit Clone Code (BAC ID) F5I14
Hit Gene Code At1g65486 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation transmembrane protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit T28I24

 
Sequence (A. th genome BLAST matches underlined) 
>48-K014769-022-005-H06-8409
NTTTTGATCCATGTAGACTTTCCCGGACATGAAAGCATTTACAATTGAATATATCCTGCC
GCTAAAATAGTCAATAGGTTAAAAACAAAATCTAGCTAAGAAATGGAATCTGTCATTAGT
TAACCACCTAAGTCGATATATACTATACTGTTGGGATTGGACTACTATAGGATCCTCACT
ACAGAGACACACATCCGGATAGGAAAACATCTTCTCTTTGTATCTAAATAATCCCTATTT
GTGTGGCAACTCCCTAAACATTATCTTCCCCGGAATAATTTCACACCCAAAAAAAAAAAA
TNCCTCCCCCCTGCGGGCGACCAGCCTCACATATATACCAAAACACGACAAATCCAACAC
TGCATTTTTACCCACCTATTACATCACCCATCACCAAGTATTAGTTGCATAGACTTATTA
ATTCACCACAAACACAACCCAGCCAATCCCATCCAACCCCGCAATATCTCCACGCCCCAA
CACAACTCTACCCTAAATACAAATCCACGTAAATCCACACAATATTCTACCCGGAAAGGT
GACCGAGACAGAAAAACTCCACCCCGTTCATCACTCCGACTCCGCTCTTTAAAAACCAAT
TCA
GenBank Accession AL751622 [GenBank]
Graphic View Graphic view of sequence AL751622 of line 005H06
Predicted Position of Insertion Chr2:10390620 - go to primer design
BLAST e Value 4e-44
Hit Clone Code (BAC ID) T28I24
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37