SimpleSearch - Line and FST details


Line specific information

 
Line ID 006B01
Vector Used pAC106
Line Availability available as T3 set from NASC (N400493)
Segregation Analysis 100:32:26
Confirmed for Hit MRO11
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At1g06180

 
Sequence (A. th genome BLAST matches underlined) 
>02-K014808-022-006-B01-8409
TTTGATCCATGTAGATTTCCCGGAATGAAGCATTACAATTGAAATATCCTGTAATAGCGT
TTATTAAAAGATCGAGTAATAAGTAACAAAACTATACATACTCCGGTGTTAGTTTTAACA
TGGAAGTAATCTATGGGATCCTCCTATAGTGACGAAATATACATATGGCAAATACCAAAT
ATAAAACGGCTTATAAACCGGCTATGGGATCCTCCCTATAGTGAGNCCTCTGCNNCACAT
AACNATGATGAAGAAAACTCGAGACGGGAAGGGAATGATGAAAAGGAATGATGAGCTGTG
CTATGGGATCCTCCATATAGCGAGAGATAACCCTTTGACTAGAGCAGCGGGTGCTGTACC
GAAACTGATTGCACAAGAGGGGAAATGGGGCACATTAAAATTACCTTCTGGACAGGACCC
CCCGATCTCCAAAACCCTGCTCGCCCCAGTCGCACAAGTGGGAAATGTTGGGCTAAACCA
GenBank Accession AL935858 [GenBank]
Graphic View Graphic view of gene At1g06180
Predicted Position of Insertion Chr1:1889782 - go to primer design
BLAST e Value 6e-09
Hit Clone Code (BAC ID) F9P14
Hit Gene Code At1g06180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation myb domain protein 13
Insertion Classification CDSi
Confirmation Status failed

Gene hit MRO11

 
Sequence (A. th genome BLAST matches underlined) 
>66-K028181-022-006-B01t-8409
TCCTGTAATAGCGTTTATTAAAAGATCGAGTCAATAAGTTAACAAAACTATTACATACTC
CGGTGTTAGTTTTAACATGGAAGTAATCTAGAAATCTAAACCCGAAAAGTTTGTTTGCAA
GTTTAAAGGTTAGTAAAATTATCTCGATGGTTTATACTGTTAGTGAGATTTTTTCGAAGT
TTAAAGTGTTATCCAATAACAATTTAAAGGTTAAAAATGTTATTTTCCCCTAAATATACT
AATCGGTAAGATATCCATAGGTAATACCAAAACCAAGAAAGAAAGACCACTAATCTGTTT
ATACGGTGGAAATTAGTCCCACGCCTAAAAATCTTGTATGGGATCCTCCCTATAGTGAGT
CTTAAGAATGGGAGGATTNNAAGNAGGGGGGCGGCCTCACTATAGGGAGGATCCCA
GenBank Accession CR769804 [GenBank]
Graphic View Graphic view of sequence CR769804 of line 006B01
Predicted Position of Insertion Chr5:8092499 - go to primer design
BLAST e Value 4e-154
Hit Clone Code (BAC ID) MRO11
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR769805 [GenBank]


Last Updated on 10.06.2021 13:37