SimpleSearch - Line and FST details


Line specific information

 
Line ID 006F04
Vector Used pAC106
Line Availability available as T3 set from NASC (N400544)
Segregation Analysis 50:40:23
Confirmed for Hit At4g09800 At4g27350
Parent of DUPLO pair none
Parent of pair(s) 2926, 6918, 12263

Gene hit At4g09800

 
Sequence (A. th genome BLAST matches underlined) 
>30-K014808-022-006-F04-8409
TTGATCCATGTAGAATTTCCCGGACCATGAAGCCATTACAATTGAATCTATCTCTGGTGG
TAACAATTCCGCCGCCGTAGACCGCAGAAATTCCCGCCGGAGATGGTCCCGTTCTCGTCC
AGCTATTCTCGTCTCAGGGATGTAAAACATCGCCCGCGGCGGAGATGTTGATGTCCCCGG
CTATGGGATCCTACTATNAGTGAGGTTATCAATCTCAGCAGCAGATAACTCACCAGCCCT
GTTAAACATACATCATATAAGACAACAATCTCCCACAAAGCAACACAATTTGCAAACTAC
GAGACACAATAATATGCGCCGATCTATGATCTATGGGATCCTC
GenBank Accession AL751699 [GenBank]
Graphic View Graphic view of gene At4g09800
Predicted Position of Insertion Chr4:6174755 - go to primer design
BLAST e Value 3e-69
Hit Clone Code (BAC ID) F17A8
Hit Gene Code At4g09800 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation S18 ribosomal protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At4g27350

 
Sequence (A. th genome BLAST matches underlined) 
>30-K014798-022-006-F04-8409
NTTTTGATCCATGTAGCATTTCCCGGACATTGAAGCATTTACAATTGAATCTATCTCTGG
TGGTAACAACTTCCGCCGCCGTAGCCGCAGAAATTCCCGCCGGAGATGGTCCCGTTCTCG
TCCAGCTATTCTCGTCTCAGGGATGTAAAACATCGCCCGCGGGGGAGATGTTGATGTCCC
GGCTAGGTCGAGGTGATTGCCACGCTGATATCCGTGGCGAAAATGGAGGATCTGGATCTC
CTGACGATGGTTTTGGTGTTTCATGTGGATTATTGGGATTACAAGGGGTGGAAAGATCCG
TATGGATCGAGCCAATGGACGGTGAGGCAGAAGGCGTATATAGAGGCGTTGAATCTGGAT
ACGATGTTTACTCCGCAGCTTGTGATCCAAGGTCGTTCTCAATTGATCGGAAACGAAGAG
GAGACGCTGCTCAAATCTATCTCCGAAGCGCCTATGGGATCCT
GenBank Accession AL751698 [GenBank]
Graphic View Graphic view of gene At4g27350
Predicted Position of Insertion Chr4:13692569 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) M4I22
Hit Gene Code At4g27350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation membrane lipoprotein lipid attachment site-like protein, putative (DUF1223)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37