SimpleSearch - Line and FST details


Line specific information

 
Line ID 007C11
Vector Used pAC106
Line Availability available as T3 set from NASC (N400611)
Segregation Analysis 50:49:48
Confirmed for Hit At1g06750 At5g13550
Parent of DUPLO pair none
Parent of pair(s) 8006, 92057

Gene hit At1g06750

 
Sequence (A. th genome BLAST matches underlined) 
>83-K014799-022-007-C11-8409
TTGATCCATGTAGCATTTCCCGGACATGAAGTCCTTTACAATTGATATACTCAAATGTTA
AAGAGCTTTGTATCATTTATTCCATCAATGCTCATAAGCTTTACCCTATGGGATCCTCCT
ATAGTGAGCAGCACCTGCACCAATGCTGTGCTTTCATTCTGAAACCATCTGGTTACATTC
TCTGCTTCAACTACATACATCTACACCTATCTTTATATACCCAGCAAAAGAGCAAACTCT
ATAAAGAGACCTTCACTATCGCTTTTGATGAATCCGTAAGCACACTGCTAACCCCTGCAC
ACATCCCACCACCCATAGAGAGAGACACTGCACTTCTGTGTTTGAGAACCACTGGTGCCA
TAACTTTTGTGCACTGAGAGACATCCACAAACGCCACGCCCATTGATACTCATTTGCTCT
ACCAAAGTGTGGAACACT
GenBank Accession FR799919 [GenBank]
Graphic View Graphic view of gene At1g06750
Predicted Position of Insertion Chr1:2075145 - go to primer design
BLAST e Value 2e-24
Hit Clone Code (BAC ID) F4H5
Hit Gene Code At1g06750 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation P-loop containing nucleoside triphosphate hydrolases superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g13550

 
Sequence (A. th genome BLAST matches underlined) 
>83-K014799-022-007-C11-8409
TTGATCCATGTAGCATTTCCCGGACATGAAGTCCTTTACAATTGATATACTCAAATGTTA
AAGAGCTTTGTATCATTTATTCCATCAATGCTCATAAGCTTTACCCTATGGGATCCTCCT
ATAGTGAGCAGCACCTGCACCAATGCTGTGCTTTCATTCTGAAACCATCTGGTTACATTC
TCTGCTTCAACTACATACATCTACACCTATCTTTATATACCCAGCAAAAGAGCAAACTCT
ATAAAGAGACCTTCACTATCGCTTTTGATGAATCCGTAAGCACACTGCTAACCCCTGCAC
ACATCCCACCACCCATAGAGAGAGACACTGCACTTCTGTGTTTGAGAACCACTGGTGCCA
TAACTTTTGTGCACTGAGAGACATCCACAAACGCCACGCCCATTGATACTCATTTGCTCT
ACCAAAGTGTGGAACACT
GenBank Accession FR799919 [GenBank]
Graphic View Graphic view of gene At5g13550
Predicted Position of Insertion Chr5:4359547 - go to primer design
BLAST e Value 2e-24
Hit Clone Code (BAC ID) T6I14
Hit Gene Code At5g13550 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation sulfate transporter 4.1
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit FR799920 [GenBank]


Last Updated on 10.06.2021 13:37