SimpleSearch - Line and FST details
Line specific information
| Line ID | 007G12 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400660) |
| Segregation Analysis | 50:45:34 |
| Confirmed for Hit | At2g23910 |
| Parent of DUPLO pair | 2730 |
| Parent of pair(s) | none |
Gene hit F19B15
| Sequence (A. th genome BLAST matches underlined) | >95-K014799-022-007-G12-8409 TTTGATCCATGTAGATTTCCCGGACTGAAGCACTTACAATTGAATTATCCAACAAATATC TTCTTTTCTCTCCTACACTTCTTCACGAATTTCTAATCACAAAACTGATGAATCAAGAAA GACCTTTCTTGATGTTGTGTTCTTGATGCTTCCCTTATGTTGGTTTCTGGATTCTCAAGA GATTGCTCACATTATTATGCATGTATACNNNNNGNGNCNAAAAGATATTAAGAAAGAAGC CGCGGGAATATCCAGATATGTTACTCAAAAGAATCGGCCTAACACCACTATGGGATCTAC ATATGNNNGNGNNCNNNNNNNACNNANNNNGACCCNNATNCTGATTGAAAGCAAATGCCT AAAGGGCGCTTTATGGAGAATTTCTTATTTTTCAAAGATGAATCAGCNATGAGTTTAAAG CCATAAAGTTTGACTCGGTTATGCAATCATATGAATAAAAAAGCCATTTATCAATGTGGA GCGATG |
| GenBank Accession | AL751809 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:14358478 - go to primer design |
| BLAST e Value | 5e-56 |
| Hit Clone Code (BAC ID) | F19B15 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At1g41830
| Sequence (A. th genome BLAST matches underlined) | >95-K014809-022-007-G12-8409 NTTTGATCCATGTAGATTTCCCGAACTGAAGCCATTACAATTGAATATATCCACTATATT ATTACGTTCTCACGCCGTAAAGATTTTTTCTTATCTTTTAACTTTGGCCGGCCAAAGCAC AAAATAGACGGTTTTCAGGCCTTTAAAAAACTTTTCTTTGCTAGGGGAACCCC |
| GenBank Accession | AL751810 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:15606738 - go to primer design |
| BLAST e Value | 3e-05 |
| Hit Clone Code (BAC ID) | F5A13 |
| Hit Gene Code | At1g41830 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SKU5-similar 6 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At2g23910
| Sequence (A. th genome BLAST matches underlined) | >09-K016930w-022-007-G12T-8409 TTTCCCGGACTGAAGCCTTTACCTTGAATATATCCAACTAAATATCTTCTTTTCTCTCCA TACACTTTTTCCAGATATTTCTAATCAACAAAACTGATGAATCAAGAAAAGACCATTTCT TGTTGTTGTGTTCTTGATGCTTCCACTTATGTTGGTTTCTGGATTCTCAAGAGATTGCTC GCTATGGGATCCTCCCTATAGTGAGAAAANACCACANGAGTTGGCCCCTTTTTTTTCCAA AAAAAAGTCGAAGAGGCCCCCACCTTAAAAAGAGACTCCTNNTTTAACACCATTGGCCCA CATACATGATTGATTATGGGTCGTACAACGCAACAATAAGGTTGGTTACTTATCAAAACT CCGGCGAGAACACTCCCATTGACTCGGTATGAACCGCTTTGACCTGTAACCTTCTTAAAC GACCAGAATCAACGACAACCTCCTACTGTTATTTGAAACGCGATCTGTCCTGTTC |
| GenBank Accession | AL935863 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:10177839 - go to primer design |
| BLAST e Value | 1e-77 |
| Hit Clone Code (BAC ID) | T29E15 |
| Hit Gene Code | At2g23910 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NAD(P)-binding Rossmann-fold superfamily protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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