SimpleSearch - Line and FST details


Line specific information

 
Line ID 007G12
Vector Used pAC106
Line Availability available as T3 set from NASC (N400660)
Segregation Analysis 50:45:34
Confirmed for Hit At2g23910
Parent of DUPLO pair 2730
Parent of pair(s) none

Gene hit F19B15

 
Sequence (A. th genome BLAST matches underlined)
>95-K014799-022-007-G12-8409
TTTGATCCATGTAGATTTCCCGGACTGAAGCACTTACAATTGAATTATCCAACAAATATC
TTCTTTTCTCTCCTACACTTCTTCACGAATTTCTAATCACAAAACTGATGAATCAAGAAA
GACCTTTCTTGATGTTGTGTTCTTGATGCTTCCCTTATGTTGGTTTCTGGATTCTCAAGA
GATTGCTCACATTATTATGCATGTATACNNNNNGNGNCNAAAAGATATTAAGAAAGAAGC
CGCGGGAATATCCAGATATGTTACTCAAAAGAATCGGCCTAACACCACTATGGGATCTAC
ATATGNNNGNGNNCNNNNNNNACNNANNNNGACCCNNATNCTGATTGAAAGCAAATGCCT
AAAGGGCGCTTTATGGAGAATTTCTTATTTTTCAAAGATGAATCAGCNATGAGTTTAAAG
CCATAAAGTTTGACTCGGTTATGCAATCATATGAATAAAAAAGCCATTTATCAATGTGGA
GCGATG
GenBank Accession AL751809 [GenBank]
Graphic View Graphic view of sequence AL751809 of line 007G12
Predicted Position of Insertion Chr4:14358478 - go to primer design
BLAST e Value 5e-56
Hit Clone Code (BAC ID) F19B15
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g41830

 
Sequence (A. th genome BLAST matches underlined)
>95-K014809-022-007-G12-8409
NTTTGATCCATGTAGATTTCCCGAACTGAAGCCATTACAATTGAATATATCCACTATATT
ATTACGTTCTCACGCCGTAAAGATTTTTTCTTATCTTTTAACTTTGGCCGGCCAAAGCAC
AAAATAGACGGTTTTCAGGCCTTTAAAAAACTTTTCTTTGCTAGGGGAACCCC
GenBank Accession AL751810 [GenBank]
Graphic View Graphic view of gene At1g41830
Predicted Position of Insertion Chr1:15606738 - go to primer design
BLAST e Value 3e-05
Hit Clone Code (BAC ID) F5A13
Hit Gene Code At1g41830 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SKU5-similar 6
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g23910

 
Sequence (A. th genome BLAST matches underlined)
>09-K016930w-022-007-G12T-8409
TTTCCCGGACTGAAGCCTTTACCTTGAATATATCCAACTAAATATCTTCTTTTCTCTCCA
TACACTTTTTCCAGATATTTCTAATCAACAAAACTGATGAATCAAGAAAAGACCATTTCT
TGTTGTTGTGTTCTTGATGCTTCCACTTATGTTGGTTTCTGGATTCTCAAGAGATTGCTC
GCTATGGGATCCTCCCTATAGTGAGAAAANACCACANGAGTTGGCCCCTTTTTTTTCCAA
AAAAAAGTCGAAGAGGCCCCCACCTTAAAAAGAGACTCCTNNTTTAACACCATTGGCCCA
CATACATGATTGATTATGGGTCGTACAACGCAACAATAAGGTTGGTTACTTATCAAAACT
CCGGCGAGAACACTCCCATTGACTCGGTATGAACCGCTTTGACCTGTAACCTTCTTAAAC
GACCAGAATCAACGACAACCTCCTACTGTTATTTGAAACGCGATCTGTCCTGTTC
GenBank Accession AL935863 [GenBank]
Graphic View Graphic view of gene At2g23910
Predicted Position of Insertion Chr2:10177839 - go to primer design
BLAST e Value 1e-77
Hit Clone Code (BAC ID) T29E15
Hit Gene Code At2g23910 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation NAD(P)-binding Rossmann-fold superfamily protein
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37