SimpleSearch - Line and FST details


Line specific information

 
Line ID 008H09
Vector Used pAC106
Line Availability available as T3 set from NASC (N400765)
Segregation Analysis 50:39:32
Confirmed for Hit At5g52170
Parent of DUPLO pair none
Parent of pair(s) 5420, 74608, 74613, 74617
Note

Gene hit At5g52170

 
Sequence (A. th genome BLAST matches underlined) 
>67-K016930w-022-008-H09T-8409
GATCTGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGATCCATGCTGATCC
ATGTAGATTTCCCAGGACACAAGGACTCGGTTTAAACTATCAGTGCTTCGTACCCGGGGA
TCAGATTGTCGCTTCTTTTCAGCTTATGTGGCGCTTCTTCCATCGGGGTTCTCGATATTG
CCTGACGGATCATCATCATCGTCTGATCAGTTCGATACCGATGGCGGTTTGGTGAATCAA
GAAAGCAAAGGATGTCTCCTGACTGTAGGATTTCAGATCTTAGTGAACAGCCTACCGACT
GCAAAACTCAACGTGGAATCTGTTGAAACTGTTAACAACCTCATCGCTTGCACCATTCAC
AAGATCAGAGCCGCTCTTCGTATACCTGCTTAGCTAAAGTTGTAGGACCTAATCTTGTTT
CTATGTCTGAAACAATTTGTGAGAGTGTAGCCAAATTTGAGACTGAGTAGCTATGGGAT
GenBank Accession AL935910 [GenBank]
Graphic View Graphic view of gene At5g52170
Predicted Position of Insertion Chr5:21199625 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F17P19
Hit Gene Code At5g52170 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation homeodomain GLABROUS 7
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit AL935910 [GenBank]

Gene hit At4g16330

 
Sequence (A. th genome BLAST matches underlined) 
>67-K016981w-022-008-H09T-8409
TATCCTGTCATTTCCCGGACTGAAGCCTTTACACTTGAATATATCCTGATTAACGTGAAT
CCATATCTTTACCAATGGACGATACGAACTTGCTCAACATATACCTGTTACTAATGCGAA
TCGGGCACGGTTATCTTCTCTTACCTTTTATGATCCCTCCTACACTGCAAGGATACCATC
TTTTTCTCAACTCTCCCCTCCGCCTTACAAGGAAGTTGTGCATGTTCAATATGTTTCATC
CTGGAACTCTAAAGGTCCTGACGGTCTACAAAACCTCGATGCTCTTCTCTACTACGTTTA
TGCTAATGAGTATGTGGACGCTCTTTGCCACGTGTGAAAAGCGGTTTCACTAGAGTGGCT
CGCAAAAACTCAAAAGACACATCCGATAACTGCTAATAAACTGAATGAATCCTATGGCAT
CCTCCCTATGACTGAGACAATTTGTGAGAGTGTAGCCAAATTTGAGACTGAGTACCTATG
GGATCCTCCCTATAGTGAG
GenBank Accession AL935911 [GenBank]
Graphic View Graphic view of gene At4g16330
Predicted Position of Insertion Chr4:9226534 - go to primer design
BLAST e Value 3e-82
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g16330 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 131E07


Last Updated on 10.06.2021 13:37