SimpleSearch - Line and FST details


Line specific information

 
Line ID 009A05
Vector Used pAC106
Line Availability available as T3 set from NASC (N400773)
Segregation Analysis 50:14:11
Confirmed for Hit At4g15210
Parent of DUPLO pair 2770
Parent of pair(s) none

Gene hit F7K2

 
Sequence (A. th genome BLAST matches underlined) 
>13-K028184-022-009-A05t-8409
TCTACTATATCATGAAACTTACAATCGTCTATCAAACGTGTATGGGATCCTCCCTATAGT
GAGTCGTATTACTCACTCTCTTTTACTATTTCCTTTGCGGACATCGCTGCTGACGTCTTA
CCTTTGGGGGGGGGGGGGACTAC
GenBank Accession FR799966 [GenBank]
Graphic View Graphic view of sequence FR799966 of line 009A05
Predicted Position of Insertion Chr4:11853345 - go to primer design
BLAST e Value 3e-10
Hit Clone Code (BAC ID) F7K2
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit FR799965 [GenBank]

Gene hit At4g15210

 
Sequence (A. th genome BLAST matches underlined) 
>65-K118628-0022-009-A05C-3144
CCTTCGCAGACCCTTCCTCTAATAAGGAAGTTCATTTCATTTGGAGAGGACAGGGTACCC
GGGGATCAGATTGTCGTTTCCCGCCTTCGGTTTAAACTATCAATGTTACGTTTCCACCAC
ATTGGTGAAAAGACATGATTGCTTGGATTTTGAGTCCCAAACGTGCGATCAGCTGGAACA
GCGTTTTGTAGGCCGTCCAATCATATTGTTTGGGACCTTTGGATTCTATGATTCCCCACC
AAACATCGACCATAACGCCATCAACGCCAGCTTCTTCTTTGAGACGTTTAAGCTGCGTTT
CAAGCGTTTCTGGGTCCGCAAATACATTTTCCACATTCACAACTCCCAACTGTCACATTC
ACAACATATTTTCATTGATAGTTATGATCAAAGACATTGTTGAGAAAGAACAAAAAACCA
AAAAAACATTTTGAACCATTATATATGCATAAATGCGAAAATGCACATTATTTAGCGTGT
GAAAAGATATATAGAATTACAAACTATGTAATTGCTAAATCACATATGATGGTGGCTATG
TCATTCAAAGAATTAGATTTATATGTTCCCTTGTCTCCGTAAATTCAAGTCTCGGACTGA
AAGTCATAACTAAATGATAGGAAATATTTTTGGCAAGATCTAGTATAGTCACTTATCCTT
TGTACGTTTATAATCAAAGAGTTCTGGCCGAAGCACATACAAATT
GenBank Accession HG968555 [GenBank]
Graphic View Graphic view of gene At4g15210
Predicted Position of Insertion Chr4:8668477 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) FCAALL
Hit Gene Code At4g15210 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation beta-amylase 5
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CU457822 [GenBank] CU457821 [GenBank]


Last Updated on 10.06.2021 13:37