SimpleSearch - Line and FST details
Line specific information
| Line ID | 009C02 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400794) |
| Segregation Analysis | 50:43:35 |
| Confirmed for Hit | At1g10200 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4335, 92563 |
Gene hit At1g10190
| Sequence (A. th genome BLAST matches underlined) | >11-K014859-022-009-C02-8409 TGATCCATGTAGCATTTCCCGGACATGAAGCATGGAACATAACCCTTTAATATATAAGGA CACGTATATTTCCCGGACATGAAGCCATTGCTCATCAGGAAAGATTTGAGATTGGACTAC CTTCTCTATGGGATCCTCCCTATAGTGAGAAGAAAAAGAAAGAGTCATTACCAATTTTTT TTCAATTCCCAAATGTAGATGCCCCCCCCCGTTATTATA |
| GenBank Accession | AL751950 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:3345632 - go to primer design |
| BLAST e Value | 1e-07 |
| Hit Clone Code (BAC ID) | F14N23 |
| Hit Gene Code | At1g10190 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | NEP-interacting protein, putative (DUF239) |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At1g10200
| Sequence (A. th genome BLAST matches underlined) | >04-K016981w-022-009-C02T-8409 CTGATCATGAAAGATTTGAGATTGGATACCTTCTCAATTGGAGGCGCGGGATTACTGCAA CCGGGGCTTTGTGCTCGTGGTCCACCAAGCATATTCAACGCTTTGGTTTCAGCATGTGTC AGTTACACTTCTCTCAAGTTCTGTGTTAGAAACATTCATGAACGTCGAGATCATACAAAG GAGAATTGGGATGCTGACCTAAAGTACCTCATCCCTCCGAAAGACGATCAGGTTTCCCCA TCATTGGCGGCCCTGTACATATAAATGAACCGAACTTAACATCCATACTTCGAGATTGAA AATCCCCACTCACAAAGCTTTTCAGATTTTGAGCTGTATTTGGTAATTGAACTTCTAAGG TCTGCTCCAGACTTCCAGATCTCTTGAACTTCTGATCCAAATGTGGCCTGCATCTAGAGA CTCCTTCATCGGAGTTGTGATTGCTAAGCTGACTCATCANAACCATTAATACCAATAGGA TCACCCCTAATCGGTCAGAATCTTTTAGACCAAATCAGTTTCCATAGCCAAAAATTTCAA AGATTTCTACTTAATTTGATTGGACTTCTTCATCTACATATATATCCACTATGGGATCTC CCC |
| GenBank Accession | AL935915 [GenBank] |
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| Predicted Position of Insertion | Chr1:3346967 - go to primer design |
| BLAST e Value | 1e-47 |
| Hit Clone Code (BAC ID) | F14N23 |
| Hit Gene Code | At1g10200 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | GATA type zinc finger transcription factor family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | AL935915 [GenBank] |
Gene hit At4g35160
| Sequence (A. th genome BLAST matches underlined) | >11-K027912-022-009-C02-8409 ACACTGATAGTTTAAACCGAAGGCGGGAAACGACAATCTGATCCCCGGGTATGGGATCCT CCCTATAGTGAGTCGTATTACTCACTCTTTTTTGCGTCTTCCTTTTCGGACAGCTTTGCG AATATTTCTCTTTGATGTTCTTCTTTGTCCCTCTCCTCGTATCGTGTTAAGCCAGTTTCT TTACCACCAAAGTCCCATTCTTTCTTTGTCCGTTCTTTGCCTGTGCTTGTGTGATCCATC ATCACCATATCAAGCATCAATCTCACGTGCTCTAACTTTTCATCTCGTTCGTCCACTATC ATCGTCTTTTTATTCTCTCCGATCACCGATTCCACTATCAACACTTTTCCGATATTTGGA GGGACCGCTTCTTTGCAGTTCTTTCGTGTCTTTATGCAATCTTTGTCTCCCCAATCGTGT AACGCCCACTGCGCCATTCATTTTTTTGATTTT |
| GenBank Accession | CR769819 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:16730873 - go to primer design |
| BLAST e Value | 6e-119 |
| Hit Clone Code (BAC ID) | T12J5 |
| Hit Gene Code | At4g35160 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | O-methyltransferase family protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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