SimpleSearch - Line and FST details
Line specific information
| Line ID | 009E05 |
| Vector Used | pAC106 |
| Line Availability | available as T3 set from NASC (N400821) |
| Segregation Analysis | 50:49:47 |
| Confirmed for Hit | At1g31310 |
| Parent of DUPLO pair | 11760 |
| Parent of pair(s) | none |
| Note |
Gene hit At3g06365
| Sequence (A. th genome BLAST matches underlined) | >37-K027837-022-009-E05-8409 TATTGTTATATATTTTGCTCAAATGTATGGCTATCCTCCCTACAATGAGTCATACTACAT CTGCGCATATCTTTCATTGATGTGCGGCCCCTGTCCAACTCCCCCCCTGACAATGTCCTC CGCCCGCATCGAACCGCCCAAACGAGCACTTGTAACCATCATCCGGCGTTATGATGTACC CACACAACAGTCAATCCGTGAGATCAGCCGACGCACCGGGCAGGCGCGCAACACGATCGC AAAGTATTTGAACGCAGGTATGGGATCCTCCCTATAGTGAGTGCAATTACACACCCACCT TTACGAATACCGTTTCCCAAAAAGAAACGGAGTAAATCGGCAAAGAAATGAACAGAAGAA ATATAGAGAGTGGAGATTTATAACGCTTCAGACACTTTAAGCAAATCACATCAGCCAAGA ATGTTTGAACCCAACACTCCTGGAGAACACAAGAGCGGTCAGGTGAAATAAATGGCAGGG AACCAAACAATA |
| GenBank Accession | FR799977 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:14202808 - go to primer design |
| BLAST e Value | 2e-04 |
| Hit Clone Code (BAC ID) | F21A14 |
| Hit Gene Code | At3g06365 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | novel transcribed region |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
Gene hit At3g61415
| Sequence (A. th genome BLAST matches underlined) | >37-K014859-022-009-E05-8409 TTGATCCATGTAGATTTCCCGGCACATGAAGCCTTTACTTATATAAAGAGTGAGGGTTAG TCTTGTTAGATATTTTGCTCAAATGTGCTATCGGATACCTCACTATCTTGCAGTCTAGTA TCCAGATGATCAGATCTAACGCACTGTCTCCGCTTTGCGAGTCACCGAACTTGCTCACAA AGACCGCCGGCACGGGAACATCCGACTACCGAGCTCTGGGATCCTCCCATAGGCGAGGCC CCCGCCGAACGAGCACGGAGTAAGACGCCTACCGCTACTACCGCCGGAACCGCTCTGGCA CCCAACCTCTCACTTATCCTACGCCTCTCACGGCATTTCACAAAG |
| GenBank Accession | AL751965 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:22725435 - go to primer design |
| BLAST e Value | 1e-13 |
| Hit Clone Code (BAC ID) | F2A19 |
| Hit Gene Code | At3g61415 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SKP1-like 21 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g31310
| Sequence (A. th genome BLAST matches underlined) | >37-K028791-022-009-E05-8409 TATCCTGAGAGACTACAAAAAAGTTAGAGAGTATGGGATCCTCCCTATAGTGAGTCNTAT TACCCCCCC |
| GenBank Accession | CR933976 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:11199754 - go to primer design |
| BLAST e Value | 2e-07 |
| Hit Clone Code (BAC ID) | T19E23 |
| Hit Gene Code | At1g31310 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hydroxyproline-rich glycoprotein family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g19700
| Sequence (A. th genome BLAST matches underlined) | >85-K014860-022-009-E05-8409 TGATCCATGTAGATTTCACGGACATGAAGCACTTTAGTTATATAAAGAGTGAGGGTTAGT ATTGTTAGATATTTTGCTAAATGCACTATGGGATCCTCCTATAGAGAGACCGCCTAGACC GATCGTATCATCCCTGTTGTCAACTGAACGGGGTGTAACTCCAGCCTATGACTTCCCCAC ACCTATGGGCGCCTCTCGCTGGTGATGTGAACATAGCCCCGTCGTGTGCGAAGATTCATA CCCAGACATCGCTTACGCCACGAGCAAACGCAGACGCCTTCAGATCTATTACCCCATCAA AGGAAACCGCCACTATTGTTGATAACCTA |
| GenBank Accession | AL751966 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:6661070 - go to primer design |
| BLAST e Value | 8e-27 |
| Hit Clone Code (BAC ID) | T29J13 |
| Hit Gene Code | At5g19700 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | MATE efflux family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 359H03 |
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Last Updated on 10.06.2021 13:37 |
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